{
  "_id": "6a5b3f9a9baadeef8ab4d485",
  "Package": "rTRMui",
  "Type": "Package",
  "Title": "A shiny user interface for rTRM",
  "Version": "1.51.0",
  "Date": "2015-09-17",
  "Author": "Diego Diez",
  "Maintainer": "Diego Diez <diego10ruiz@gmail.com>",
  "Description": "This package provides a web interface to compute\ntranscriptional regulatory modules with rTRM.",
  "License": "GPL-3",
  "LazyLoad": "yes",
  "ByteCompile": "yes",
  "biocViews": "Transcription, Network, GeneRegulation, GraphAndNetwork, GUI",
  "URL": "https://github.com/ddiez/rTRMui",
  "BugReports": "https://github.com/ddiez/rTRMui/issues",
  "Config/pak/sysreqs": "cmake libglpk-dev make libbz2-dev liblzma-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils\nzlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:38:11 UTC",
  "RemoteUrl": "https://github.com/bioc/rTRMui",
  "RemoteRef": "HEAD",
  "RemoteSha": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-18 08:43:49 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "rTRMui_1.51.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/f6e80364efee53245c52e74ae9584594c1a1c2f8403b1b6be3b8bf34cb24ad2c",
  "_filesize": 1145526,
  "_sha256": "f6e80364efee53245c52e74ae9584594c1a1c2f8403b1b6be3b8bf34cb24ad2c",
  "_expires": "2026-10-26T08:55:52.000Z",
  "_created": "2026-07-18T08:43:49.000Z",
  "_published": "2026-07-18T08:55:53.967Z",
  "_bioccheck": {
    "error": 3,
    "warning": 5,
    "note": 5
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982",
  "_status": "success",
  "_upstream": "https://github.com/bioc/rTRMui",
  "_commit": {
    "id": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379891
  },
  "_maintainer": {
    "name": "Diego Diez",
    "email": "diego10ruiz@gmail.com",
    "login": "ddiez",
    "description": "Computational biologist working on immunology",
    "uuid": 3292149
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 88063556498,
      "time": 297,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8427748712"
    },
    {
      "job": 88063556522,
      "time": 603,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8427793665"
    },
    {
      "job": 88063556531,
      "time": 556,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8427787461"
    },
    {
      "job": 88063556509,
      "time": 210,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8427793709"
    },
    {
      "job": 88063556543,
      "time": 238,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8427798874"
    },
    {
      "job": 88063079520,
      "time": 379,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8427704637"
    },
    {
      "job": 88063556520,
      "time": 223,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8427737949"
    },
    {
      "job": 88063556514,
      "time": 386,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8427761641"
    },
    {
      "job": 88063556985,
      "time": 357,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8427757448"
    },
    {
      "job": 88063556526,
      "time": 312,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8427750978"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "shiny",
      "version": ">= 0.9",
      "role": "Imports"
    },
    {
      "package": "rTRM",
      "role": "Imports"
    },
    {
      "package": "MotifDb",
      "role": "Imports"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Imports"
    },
    {
      "package": "org.Mm.eg.db",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.51.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.50.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "transcription",
    "network",
    "generegulation",
    "graphandnetwork",
    "gui"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "ddiez",
      "count": 6,
      "uuid": 3292149
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 447,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 405,
    "source": "https://www.bioconductor.org/packages/stats/bioc/rTRMui"
  },
  "_devurl": "https://github.com/ddiez/rtrmui",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/rTRMui.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ddiez/rtrmui",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "runTRM"
  ],
  "_help": [
    {
      "page": "rTRMui-package",
      "title": "rTRM shiny UI",
      "topics": [
        "rTRMui-package",
        "rTRMui"
      ]
    },
    {
      "page": "runTRM",
      "title": "Runs an rTRM (shiny) web server.",
      "topics": [
        "runTRM"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "askpass",
    "base64enc",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "BiocIO",
    "BiocParallel",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "bslib",
    "cachem",
    "cigarillo",
    "cli",
    "codetools",
    "commonmark",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "DelayedArray",
    "digest",
    "fastmap",
    "fontawesome",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicAlignments",
    "GenomicRanges",
    "glue",
    "htmltools",
    "httpuv",
    "httr",
    "igraph",
    "IRanges",
    "jquerylib",
    "jsonlite",
    "KEGGREST",
    "lambda.r",
    "later",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "MotifDb",
    "openssl",
    "org.Hs.eg.db",
    "org.Mm.eg.db",
    "otel",
    "pkgconfig",
    "png",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "RCurl",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "Rsamtools",
    "RSQLite",
    "rtracklayer",
    "rTRM",
    "S4Arrays",
    "S4Vectors",
    "sass",
    "Seqinfo",
    "shiny",
    "snow",
    "sourcetools",
    "SparseArray",
    "splitstackshape",
    "SummarizedExperiment",
    "sys",
    "vctrs",
    "withr",
    "XML",
    "xtable",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "rTRMui.Rnw",
      "filename": "rTRMui.pdf",
      "title": "Introduction to rTRMui",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-10-18 03:03:18",
      "modified": "2013-10-23 14:12:09",
      "commits": 2
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "rtrmui",
  "_universes": [
    "bioc",
    "ddiez"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.51.0",
      "date": "2026-07-18T08:50:25.000Z",
      "distro": "resolute",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/e6888e39e6564a1ed5752a1e1f0eab58ad7a537408664eb482d2641a83f74f54",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.51.0",
      "date": "2026-07-18T08:49:59.000Z",
      "distro": "resolute",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/b146cdbf828419a87f1df2866dd993b67d6cf5ac608b6b220227e17a9cd4a7e1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.51.0",
      "date": "2026-07-18T08:52:45.000Z",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/b54574a06a27096abaa2d33c8d944487bfd46893264b1d6f0fea2bbdf88ccdbf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.51.0",
      "date": "2026-07-18T08:53:05.000Z",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/d134ec7d3054a1e8401174b50201dc50ede018d4f5283e005f8cfc2e579d6cc6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.51.0",
      "date": "2026-07-18T08:48:25.000Z",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/7bee29582e7d5da67a84b43290fee7e1e8d859d53a30d689c026ccad8924cd64",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.51.0",
      "date": "2026-07-18T08:47:15.000Z",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/f2514daa6fd9c225335769c4dc950de014f7452dd2967c5a83dfbb5621acaa66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.51.0",
      "date": "2026-07-18T08:46:42.000Z",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/0ddcfaa90de03ca66727e8985f39f004d7b040a662e005d984fc610d31bc1fe6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.51.0",
      "date": "2026-07-18T08:46:30.000Z",
      "commit": "9ceefbf5051efc8a322ee3b5ad4778af629d0b81",
      "fileid": "https://r2.ropensci.org/cfebad9e68a8be83ecd531ee15a19959130bcf5fb68f2d61890aa8656bcfa7fb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29637793982"
    }
  ]
}