{ "_id": "6a5b12919baadeef8ab4ae67", "Package": "rCGH", "Type": "Package", "Title": "Comprehensive Pipeline for Analyzing and Visualizing Array-Based\nCGH Data", "Version": "1.43.0", "Date": "2025-07-24", "Authors@R": "c(person(given=\"Frederic\", family=\"Commo\", role=c(\"aut\", \"cre\"), \nemail=\"fredcommo@gmail.com\"))", "Maintainer": "Frederic Commo ", "URL": "https://github.com/fredcommo/rCGH", "Description": "A comprehensive pipeline for analyzing and interactively\nvisualizing genomic profiles generated through commercial or\ncustom aCGH arrays. As inputs, rCGH supports Agilent dual-color\nFeature Extraction files (.txt), from 44 to 400K, Affymetrix\nSNP6.0 and cytoScanHD probeset.txt, cychp.txt, and cnchp.txt\nfiles exported from ChAS or Affymetrix Power Tools. rCGH also\nsupports custom arrays, provided data complies with the\nexpected format. This package takes over all the steps required\nfor individual genomic profiles analysis, from reading files to\nprofiles segmentation and gene annotations. This package also\nprovides several visualization functions (static or\ninteractive) which facilitate individual profiles\ninterpretation. Input files can be in compressed format, e.g.\n.bz2 or .gz.", "License": "Artistic-2.0", "biocViews": "aCGH,CopyNumberVariation,Preprocessing,FeatureExtraction", "VignetteBuilder": "knitr", "LazyData": "true", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-18 05:31:19 UTC", "User": "root" }, "Author": "Frederic Commo [aut, cre]", "Config/pak/sysreqs": "cmake make libbz2-dev liblzma-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:41:31 UTC", "RemoteUrl": "https://github.com/bioc/rCGH", "RemoteRef": "HEAD", "RemoteSha": "834c831ded5c35bc8e4ca951e2e4a1c6df48a9fe", "_user": "bioc", "_type": "src", "_file": "rCGH_1.43.0.tar.gz", "_fileid": "https://r2.ropensci.org/e609312cc752aaf51b25f23df5cfc81b9d48695c532d72c9df4f79584254f437", "_filesize": 4511844, "_sha256": "e609312cc752aaf51b25f23df5cfc81b9d48695c532d72c9df4f79584254f437", "_expires": "2026-10-26T05:43:42.000Z", 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