{ "_id": "6a1fd7ffb401979e73436bc6", "Package": "quantiseqr", "Title": "Quantification of the Tumor Immune contexture from RNA-seq data", "Version": "1.21.0", "Authors@R": "c(\nperson(\ngiven = \"Federico\", family = \"Marini\", role = c(\"aut\", \"cre\"),\nemail = \"marinif@uni-mainz.de\", comment = c(ORCID = \"0000-0003-3252-7758\")\n),\nperson(\ngiven = \"Francesca\", family = \"Finotello\", role = \"aut\",\nemail = \"francesca.finotello@i-med.ac.at\", comment = c(ORCID = \"0000-0003-0712-4658\")\n)\n)", "Description": "This package provides a streamlined workflow for the\nquanTIseq method, developed to perform the quantification of\nthe Tumor Immune contexture from RNA-seq data. The\nquantification is performed against the TIL10 signature\n(dissecting the contributions of ten immune cell types),\ncarefully crafted from a collection of human RNA-seq samples.\nThe TIL10 signature has been extensively validated using\nsimulated, flow cytometry, and immunohistochemistry data.", "License": "GPL-3", "biocViews": "GeneExpression, Software, Transcription, Transcriptomics,\nSequencing, Microarray, Visualization, Annotation,\nImmunoOncology, FeatureExtraction, Classification,\nStatisticalMethod, ExperimentHubSoftware, FlowCytometry", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:55:53 UTC", "RemoteUrl": "https://github.com/bioc/quantiseqr", "RemoteRef": "HEAD", "RemoteSha": "983dfb45626f28d2da5fc52e8a128d98fcebad04", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 07:23:11 UTC", "User": "root" }, "Author": "Federico Marini [aut, cre] (ORCID:\n),\nFrancesca Finotello [aut] (ORCID:\n)", "Maintainer": "Federico Marini ", "MD5sum": "a89c5ec6e370a4ab55acf85a9e08c831", "_user": "bioc", "_type": "src", "_file": "quantiseqr_1.21.0.tar.gz", "_fileid": "5869f340d5185da5a7090de356c6fb5bb731c0ff243aae00764eb8253b7e3aab", "_filesize": 3524829, "_sha256": "5869f340d5185da5a7090de356c6fb5bb731c0ff243aae00764eb8253b7e3aab", "_created": "2026-06-03T07:23:11.000Z", "_published": "2026-06-03T07:30:07.074Z", "_jobs": [ { "job": 79242732620, "time": 224, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7378245671" }, { "job": 79242732566, "time": 355, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7378283798" }, { "job": 79242732610, "time": 337, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7378278671" }, { "job": 79242732548, "time": 316, "config": "macos-oldrel-arm64", "r": 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