{ "_id": "6a474e306527f6f71f9fd7df", "Package": "quantiseqr", "Title": "Quantification of the Tumor Immune contexture from RNA-seq data", "Version": "1.21.0", "Authors@R": "c(\nperson(\ngiven = \"Federico\", family = \"Marini\", role = c(\"aut\", \"cre\"),\nemail = \"marinif@uni-mainz.de\", comment = c(ORCID = \"0000-0003-3252-7758\")\n),\nperson(\ngiven = \"Francesca\", family = \"Finotello\", role = \"aut\",\nemail = \"francesca.finotello@i-med.ac.at\", comment = c(ORCID = \"0000-0003-0712-4658\")\n)\n)", "Description": "This package provides a streamlined workflow for the\nquanTIseq method, developed to perform the quantification of\nthe Tumor Immune contexture from RNA-seq data. The\nquantification is performed against the TIL10 signature\n(dissecting the contributions of ten immune cell types),\ncarefully crafted from a collection of human RNA-seq samples.\nThe TIL10 signature has been extensively validated using\nsimulated, flow cytometry, and immunohistochemistry data.", "License": "GPL-3", "biocViews": "GeneExpression, Software, Transcription, Transcriptomics,\nSequencing, Microarray, Visualization, Annotation,\nImmunoOncology, FeatureExtraction, Classification,\nStatisticalMethod, ExperimentHubSoftware, FlowCytometry", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:55:53 UTC", "RemoteUrl": "https://github.com/bioc/quantiseqr", "RemoteRef": "HEAD", "RemoteSha": "983dfb45626f28d2da5fc52e8a128d98fcebad04", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 05:45:18 UTC", "User": "root" }, "Author": "Federico Marini [aut, cre] (ORCID:\n),\nFrancesca Finotello [aut] (ORCID:\n)", "Maintainer": "Federico Marini ", "MD5sum": "a47b30dd0091d029b036a7b39f57b2db", "_user": "bioc", "_type": "src", "_file": "quantiseqr_1.21.0.tar.gz", "_fileid": "47fa9c97a759677e89fd9a2cfa1179eb8be2c6b93ad46ea5173b74753e41a75d", "_filesize": 1965700, "_sha256": "47fa9c97a759677e89fd9a2cfa1179eb8be2c6b93ad46ea5173b74753e41a75d", "_created": "2026-07-03T05:45:18.000Z", "_published": "2026-07-03T05:52:48.506Z", "_jobs": [ { "job": 84937398662, "time": 228, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "8058767386" }, { "job": 84937398651, "time": 377, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8058802152" }, { "job": 84937398668, "time": 398, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8058807002" }, { "job": 84937398655, "time": 198, "config": "macos-oldrel-arm64", "r": 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