{ "_id": "6a4d3677088975274b3ce71f", "Package": "quantiseqr", "Title": "Quantification of the Tumor Immune contexture from RNA-seq data", "Version": "1.21.1", "Authors@R": "c(\nperson(\ngiven = \"Federico\", family = \"Marini\", role = c(\"aut\", \"cre\"),\nemail = \"marinif@uni-mainz.de\", comment = c(ORCID = \"0000-0003-3252-7758\")\n),\nperson(\ngiven = \"Francesca\", family = \"Finotello\", role = \"aut\",\nemail = \"francesca.finotello@i-med.ac.at\", comment = c(ORCID = \"0000-0003-0712-4658\")\n)\n)", "Description": "This package provides a streamlined workflow for the\nquanTIseq method, developed to perform the quantification of\nthe Tumor Immune contexture from RNA-seq data. The\nquantification is performed against the TIL10 signature\n(dissecting the contributions of ten immune cell types),\ncarefully crafted from a collection of human RNA-seq samples.\nThe TIL10 signature has been extensively validated using\nsimulated, flow cytometry, and immunohistochemistry data.", "License": "GPL-3", "biocViews": "GeneExpression, Software, Transcription, Transcriptomics,\nSequencing, Microarray, Visualization, Annotation,\nImmunoOncology, FeatureExtraction, Classification,\nStatisticalMethod, ExperimentHubSoftware, FlowCytometry", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libicu-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-07-07 12:08:07 UTC", "RemoteUrl": "https://github.com/bioc/quantiseqr", "RemoteRef": "HEAD", "RemoteSha": "066ab68f52cfa01d42be870fa4abbc4987fbe942", "NeedsCompilation": "no", "Packaged": { "Date": 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