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      "title": "QSEA: Quantitative sequencing enrichment analysis and visualization",
      "topics": [
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        "QSEA",
        "qsea"
      ]
    },
    {
      "page": "addCNV",
      "title": "estimate CNV information and add to qseaSet object",
      "topics": [
        "addCNV"
      ]
    },
    {
      "page": "addContrast",
      "title": "fit GLMs to reduced model and test for significance",
      "topics": [
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    },
    {
      "page": "addCoverage",
      "title": "Import sequencing data",
      "topics": [
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    },
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      "title": "Enrichment analysis",
      "topics": [
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      "page": "addLibraryFactors",
      "title": "Estimate effective library size",
      "topics": [
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    },
    {
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      "topics": [
        "addNewSamples"
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    },
    {
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      "title": "Estimate background reads",
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      "title": "Infer sequence pattern density values and add to qseaSet object",
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    {
      "page": "addSeqPref",
      "title": "Add sequence preference to qseaSet object",
      "topics": [
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    {
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      "title": "Prepares a qseaSet Object",
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      "title": "Fit GLM for each window",
      "topics": [
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      "topics": [
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      "title": "Principle Component Analysis (PCA) in QSea",
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      "title": "Finds Significant Regions",
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      "topics": [
        "plotPCA",
        "plotPCA,qseaPCA-method",
        "plotPCAfactors",
        "plotPCAfactors,qseaPCA-method"
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        "getParameters,qseaGLM-method",
        "getSampleNames,qseaGLM-method",
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        "qseaPCA",
        "qseaPCA-class",
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