{
  "_id": "6a1f0bffb401979e7341ca6a",
  "Package": "pvac",
  "Type": "Package",
  "Title": "PCA-based gene filtering for Affymetrix arrays",
  "Version": "1.61.0",
  "Date": "2010-12-30",
  "Author": "Jun Lu and Pierre R. Bushel",
  "Maintainer": "Jun Lu <jlu276@gmail.com>, Pierre R. Bushel\n<bushel@niehs.nih.gov>",
  "Description": "The package contains the function for filtering genes by\nthe proportion of variation accounted for by the first\nprincipal component (PVAC).",
  "License": "LGPL (>= 2.0)",
  "LazyLoad": "yes",
  "biocViews": "Microarray, OneChannel, QualityControl",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:08 UTC",
  "RemoteUrl": "https://github.com/bioc/pvac",
  "RemoteRef": "HEAD",
  "RemoteSha": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-17 09:42:56 UTC",
    "User": "root"
  },
  "MD5sum": "80d1668a2cdfbcd43f62bb82549cc914",
  "_user": "bioc",
  "_type": "src",
  "_file": "pvac_1.61.0.tar.gz",
  "_fileid": "05b01ce20212e6a44433dab8d6f5b814edcc60277cac2f27068f74d65cde7c15",
  "_filesize": 218250,
  "_sha256": "05b01ce20212e6a44433dab8d6f5b814edcc60277cac2f27068f74d65cde7c15",
  "_created": "2026-05-17T09:42:56.000Z",
  "_published": "2026-06-02T16:59:43.713Z",
  "_jobs": [
    {
      "job": 79126537895,
      "time": 148,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7041338610"
    },
    {
      "job": 79126537926,
      "time": 191,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7041343514"
    },
    {
      "job": 79126538112,
      "time": 202,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7041345114"
    },
    {
      "job": 79126538403,
      "time": 131,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7041332483"
    },
    {
      "job": 79126538301,
      "time": 131,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7041335972"
    },
    {
      "job": 79126537546,
      "time": 212,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7041321265"
    },
    {
      "job": 79126537412,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7364458686"
    },
    {
      "job": 79126538191,
      "time": 142,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7041334876"
    },
    {
      "job": 79126537965,
      "time": 132,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7041333365"
    },
    {
      "job": 79126537975,
      "time": 126,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7041333340"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 4,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/pvac",
  "_commit": {
    "id": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379708
  },
  "_maintainer": {
    "name": "Jun Lu",
    "email": "bushel@niehs.nih.gov",
    "login": "jlu276",
    "description": "",
    "uuid": 24546028
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.8.0",
      "role": "Depends"
    },
    {
      "package": "affy",
      "version": ">= 1.20.0",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "pbapply",
      "role": "Suggests"
    },
    {
      "package": "affydata",
      "role": "Suggests"
    },
    {
      "package": "ALLMLL",
      "role": "Suggests"
    },
    {
      "package": "genefilter",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.61.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.60.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "onechannel",
    "qualitycontrol"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 402,
    "source": "https://www.bioconductor.org/packages/stats/bioc/pvac"
  },
  "_mentions": 1,
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/pvac.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "pvacFilter"
  ],
  "_help": [
    {
      "page": "pvacFilter",
      "title": "Filter genes by the proportion of variation accounted for by the first principal component (PVAC)",
      "topics": [
        "pvacFilter"
      ]
    }
  ],
  "_rundeps": [
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "generics",
    "preprocessCore"
  ],
  "_vignettes": [
    {
      "source": "pvac.Rnw",
      "filename": "pvac.pdf",
      "title": "PCA-based gene filtering for Affymetrix GeneChips",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:17:13",
      "modified": "2018-09-07 19:54:52",
      "commits": 3
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "pvac",
  "_universes": [
    "bioc",
    "jlu276"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-05-17T09:45:50.000Z",
      "distro": "noble",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "5a68434c7e4f46acbf0245c639e37a6d43a50ed8c11245eb706922477bf224fc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-05-17T09:46:00.000Z",
      "distro": "noble",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "64a420c1405645ff70a00938bf81de69d1d242bb147534f5a2b4263b5aa8389f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-05-17T09:44:21.000Z",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "1f37476239af9ab72cdf38c120d0f6b6d92c6fc8ce1fb9625ef8f39ee84640b0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-05-17T09:44:37.000Z",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "6b42c4e383a1968fd6e6968940d869dcc4ccee111fc66c2d79db13eff41550c6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-05-17T09:44:31.000Z",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "093c2dcb1ba8c71b866033cc7ecb9f9457caec6ae575d034cc376e83dd75885e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-05-17T09:44:16.000Z",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "96fd1f2d3f3684e12d05ae4eefa14a4f4cdd410d2e5f03bb0af650dbb631e932",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-05-17T09:44:16.000Z",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "e01c34fe49f6264c174494c1297ae494b8993fe59e4b576792c95ff834431d1c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.61.0",
      "date": "2026-06-02T16:59:20.000Z",
      "commit": "4fb0a70e0ddecf2184ab670f03e96c135f2f530a",
      "fileid": "b19a0fcae31c4e9fd901e4ad02054e047413cb092494e5c45c603943e4d66330",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/25987335463"
    }
  ]
}