{ "_id": "6ae77371818c9e3ef6dbc2ee", "Package": "podkat", "Type": "Package", "Title": "Position-Dependent Kernel Association Test", "Version": "1.45.0", "Date": "2025-09-19", "Authors@R": "c(person(given = \"Ulrich\",\nfamily = \"Bodenhofer\",\nrole = c(\"aut\", \"cre\"),\nemail = \"ulrich@bodenhofer.com\"))", "Maintainer": "Ulrich Bodenhofer ", "Description": "This package provides an association test that is capable\nof dealing with very rare and even private variants. This is\naccomplished by a kernel-based approach that takes the\npositions of the variants into account. The test can be used\nfor pre-processed matrix data, but also directly for variant\ndata stored in VCF files. Association testing can be performed\nwhole-genome, whole-exome, or restricted to pre-defined regions\nof interest. The test is complemented by tools for analyzing\nand visualizing the results.", "URL": "https://github.com/UBod/podkat", "License": "GPL (>= 2)", "SystemRequirements": "GNU make", "VignetteBuilder": "knitr", "Collate": "AllGenerics.R AllClasses.R inputChecks.R sort-methods.R\nshow-methods.R print-methods.R summary-methods.R\np.adjust-methods.R c-methods.R access-methods.R\ncoerce-methods.R resampling.R unmaskedRegions.R\npartitionRegions-methods.R genotypeMatrix-methods.R\ncomputeKernel.R computePvalues.R readGenotypeMatrix-methods.R\nreadVariantInfo-methods.R readSampleNamesFromVcfHeader.R\nreadRegionsFromBedFile.R weightFuncs.R assocTest-methods.R\nnullModel-methods.R qqplot-methods.R plot-methods.R\nfilterResult-methods.R split-methods.R computeWeights.R\nweights-methods.R", "biocViews": "Genetics, WholeGenome, Annotation, VariantAnnotation,\nSequencing, DataImport", "NeedsCompilation": "yes", "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libxml2-dev libssl-dev\nxz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-13 13:05:42 UTC", "RemoteUrl": "https://github.com/bioc/podkat", "RemoteRef": "HEAD", "RemoteSha": "a5ee2c46535d6071db4ae2927c3d98390238b392", "Packaged": { "Date": "2026-11-01 14:12:10 UTC", "User": "root" }, "Author": "Ulrich Bodenhofer [aut, cre]", "_user": "bioc", "_type": "src", "_file": "podkat_1.45.0.tar.gz", "_fileid": "https://r2.ropensci.org/33b31da7e42d9b6fa20dfdd73fe922f3dbb00ec98eca7d94d820f14fbbee6538", "_filesize": 1382282, "_sha256": "33b31da7e42d9b6fa20dfdd73fe922f3dbb00ec98eca7d94d820f14fbbee6538", "_expires": "2027-02-09T17:14:23.000Z", "_created": "2026-11-01T14:12:10.000Z", "_published": "2026-11-01T17:14:25.794Z", "_upstream": "https://github.com/bioc/podkat", "_status": "success", "_maintainer": { "name": "Ulrich Bodenhofer", "email": "ulrich@bodenhofer.com", "login": "ubod", "description": "Professor for Artificial Intelligence at University of Applied Sciences Upper Austria / Chief Artificial Intelligence Officer at QUOMATIC.AI", "uuid": 7002430 }, "_jobs": [ { "job": 124873368766, "time": 341, "config": "bioc-checks", "r": "4.6.2", "check": "WARNING", "artifact": "13087846721" }, { "job": 124873368797, "time": 374, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "13087466334" }, { "job": 124873368877, "time": 578, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13088026511" }, { "job": 124873368809, "time": 406, "config": "linux-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13086997515" }, { "job": 124873368946, "time": 475, "config": "linux-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13087444553" }, { "job": 124873368880, "time": 246, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13092513551" }, { "job": 124873368824, "time": 780, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13092873060" }, { "job": 124873368761, "time": 442, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13092399338" }, { "job": 124873368743, "time": 598, "config": "macos-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13092693554" }, { "job": 124864117460, "time": 488, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13086619507" }, { "job": 124873368733, "time": 283, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13087980237" }, { "job": 124873368884, "time": 514, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "13086494299" }, { "job": 124873368886, "time": 591, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086748827" }, { "job": 124873368902, "time": 410, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13087451388" }, { "job": 124873368817, "time": 551, "config": "windows-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13087486020" }, { "job": 124873368821, "time": 444, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13087460863" } ], "_bioccheck": { "error": 0, "warning": 3, "note": 17 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704", "_commit": { "id": "a5ee2c46535d6071db4ae2927c3d98390238b392", "author": "UBod ", "committer": "UBod ", "message": "Change of format of inst/NEWS file\n", "time": 1778677542 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "Rsamtools", "version": ">= 1.99.1", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rhtslib", "version": ">= 1.15.3", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.11.1", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "stats", "version": ">= 4.3.0", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "Seqinfo", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "BSgenome", "version": ">= 1.32.0", "role": "Imports" }, { "package": "BSgenome.Hsapiens.UCSC.hg38.masked", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg38.knownGene", "role": "Suggests" }, { "package": "BSgenome.Mmusculus.UCSC.mm10.masked", "role": "Suggests" }, { "package": "GWASTools", "version": ">= 1.13.24", "role": "Suggests" }, { "package": "VariantAnnotation", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-20", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "genetics", "wholegenome", "annotation", "variantannotation", "sequencing", "dataimport", "curl", "bzip2", "xz-utils", "zlib", "cpp" ], "_stars": 0, "_contributors": [ { "user": "ubod", "count": 17, "uuid": 7002430 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "dtenenba", "count": 8, "uuid": 2286826 }, { "user": "hpages", "count": 8, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "link-ny", "count": 1, "uuid": 4392950 }, { "user": "sonali-bioc", "count": 1, "uuid": 6373953 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 770, "source": "https://www.bioconductor.org/packages/stats/bioc/podkat" }, "_mentions": 1, "_devurl": "https://github.com/ubod/podkat", "_searchresults": 8, "_abi": { "exports": [ { "key": "podkat::AssocTestResult", "hash": "6eb6f11aad65365e" }, { "key": "podkat::AssocTestResultRanges", "hash": "f5ee9bbb3c34b904" }, { "key": "podkat::GenotypeMatrix", "hash": "d6f54c256f566327" }, { "key": "podkat::NullModel", "hash": "24f3b3f9127743eb" }, { "key": "podkat::VariantInfo", "hash": "22d804e054f0bdf6" }, { "key": "podkat::generic:MAF", "hash": "6923853ce2f9b293" }, { "key": "podkat::generic:assocTest", "hash": "26d48a7404dc6b8b" }, { "key": "podkat::generic:filterResult", "hash": "a3eada6ac0b568b4" }, { "key": "podkat::generic:genotypeMatrix", "hash": "38393835b68942df" }, { "key": "podkat::generic:nullModel", "hash": "c5ec5803aa749a41" }, { "key": "podkat::generic:partitionRegions", "hash": "3955efca2f115e12" }, { "key": "podkat::generic:readGenotypeMatrix", "hash": "a7ec107f397d8f2b" }, { "key": "podkat::generic:readVariantInfo", "hash": "e91f2a2915712904" }, { "key": "podkat::generic:variantInfo", "hash": "de628ea15f4ffd82" } ], "imports": [ { "key": "BSgenome::GRanges_OR_NULL", "hash": "115e13d341b6edf1" }, { "key": "GenomicRanges::GRanges", "hash": "2f9f8bafb276e9ba" }, { "key": "GenomicRanges::GenomicRanges", "hash": "d3fda1b8c44bfd98" }, { "key": "GenomicRanges::GenomicRanges_OR_GRangesList", "hash": "d41eb908f2d4f222" }, { "key": "GenomicRanges::GenomicRanges_OR_GenomicRangesList", "hash": "ce9b8e58ffbeee53" }, { "key": "GenomicRanges::GenomicRanges_OR_missing", "hash": "c442ea820978b20d" }, { "key": "IRanges::Ranges", "hash": "2ec1451ebae33ae7" }, { "key": "Matrix::CsparseMatrix", "hash": "6aabce19528b6d97" }, { "key": "Matrix::Matrix", "hash": "6a8682969cdb5c1c" }, { "key": "Matrix::dMatrix", "hash": "d2233d8d290e2f52" }, { "key": "Matrix::dgCMatrix", "hash": "9abc07a4ecf0fafc" }, { "key": "Matrix::dsparseMatrix", "hash": "9e6071408fd3bb7e" }, { "key": "Matrix::generalMatrix", "hash": "5866fc9eb29dccb2" }, { "key": "Matrix::sparseMatrix", "hash": "c57bbc5261ff1fca" }, { "key": "Rcpp::Rcpp_precious_preserve()", "hash": "33a97ea62b293da6" }, { "key": "Rcpp::Rcpp_precious_remove()", "hash": "63d26947ba7e1377" }, { "key": "Rcpp::dataptr()", "hash": "54e69ad2e6668c83" }, { "key": "Rcpp::demangle()", "hash": "b0cfd6754c5ebc4e" }, { "key": "S4Vectors::Annotated", "hash": "9b5b8ee6ad9969f8" }, { "key": "S4Vectors::List", "hash": "90a253151dc8db9b" }, { "key": "S4Vectors::Vector", "hash": "09cab0bd77ae353b" }, { "key": "S4Vectors::list_OR_List", "hash": "fcd6e1f6a8d39f9c" }, { "key": "S4Vectors::vector_OR_Vector", "hash": "f3fc18c9f8ff2633" } ] }, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/podkat.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/ubod/podkat", "_realowner": "bioc", "_cranurl": false, "_exports": [ "assocTest", "betaWeights", "coefficients", "computeKernel", "filterResult", "genotypeMatrix", "invSdWeights", "logisticWeights", "MAF", "nullModel", "p.adjust", "partitionRegions", "print", "qqplot", "readGenotypeMatrix", "readRegionsFromBedFile", "readSampleNamesFromVcfHeader", "readVariantInfo", "show", "sort", "split", "summary", "unmaskedRegions", "variantInfo", "weights" ], "_datasets": [ { "name": "b36Unmasked", "title": "Unmasked Regions of Human Genomes", "object": "b36Unmasked", "file": "b36Unmasked.RData", "class": [ "CompressedGRangesList" ], "fields": [], "table": false, "tojson": false }, { "name": "b37Unmasked", "title": "Unmasked Regions of Human Genomes", "object": "b37Unmasked", "file": "b37Unmasked.RData", "class": [ "CompressedGRangesList" ], "fields": [], "table": false, "tojson": false }, { "name": "hg18Unmasked", "title": "Unmasked Regions of Human Genomes", "object": "hg18Unmasked", "file": "hg18Unmasked.RData", "class": [ "CompressedGRangesList" ], "fields": [], "table": false, "tojson": false }, { "name": "hg19Unmasked", "title": "Unmasked Regions of Human Genomes", "object": "hg19Unmasked", "file": "hg19Unmasked.RData", "class": [ "CompressedGRangesList" ], "fields": [], "table": false, "tojson": false }, { "name": "hg38Unmasked", "title": "Unmasked Regions of Human Genomes", "object": "hg38Unmasked", "file": "hg38Unmasked.RData", "class": [ "CompressedGRangesList" ], "fields": [], "table": false, "tojson": false }, { "name": "hgA", "title": "Artificial Human Chromosome for Testing Purposes", "object": "hgA", "file": "hgA.RData", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "podkat-package", "title": "PODKAT Package", "topics": [ "podkat-package", "podkat" ] }, { "page": "assocTest-methods", "title": "Perform Association Test", "topics": [ "assocTest", "assocTest,character,NullModel-method", "assocTest,GenotypeMatrix,NullModel-method", "assocTest,matrix,NullModel-method", "assocTest,TabixFile,NullModel-method", "assocTest-methods" ] }, { "page": "AssocTestResult-class", "title": "Class 'AssocTestResult'", "topics": [ "AssocTestResult", "AssocTestResult-class", "class:AssocTestResult", "show,AssocTestResult-method" ] }, { "page": "AssocTestResultRanges-class", "title": "Class 'AssocTestResultRanges'", "topics": [ "AssocTestResultRanges", "AssocTestResultRanges-class", "c,AssocTestResultRanges-method", "class:AssocTestResultRanges", "show,AssocTestResultRanges-method" ] }, { "page": "computeKernel", "title": "Compute Kernel Matrix", "topics": [ "computeKernel" ] }, { "page": "filterResult-methods", "title": "Filter Association Test Results According to p-Values or Variants' Contributions", "topics": [ "filterResult", "filterResult,AssocTestResultRanges-method", "filterResult,GRanges-method", "filterResult,GRangesList-method", "filterResult-methods" ] }, { "page": "GenotypeMatrix-class", "title": "Class 'GenotypeMatrix'", "topics": [ "class:GenotypeMatrix", "GenotypeMatrix", "GenotypeMatrix-class", "MAF,GenotypeMatrix-method", "show,GenotypeMatrix-method", "variantInfo,GenotypeMatrix-method", "[,GenotypeMatrix,index,index,missing-method", "[,GenotypeMatrix,index,missing,missing-method", "[,GenotypeMatrix,missing,index,missing-method" ] }, { "page": "genotypeMatrix-methods", "title": "Constructors for Creating 'GenotypeMatrix' Objects", "topics": [ "genotypeMatrix", "genotypeMatrix,ANY,character,missing-method", "genotypeMatrix,ANY,GRanges,missing-method", "genotypeMatrix,ANY,missing,missing-method", "genotypeMatrix,ANY,numeric,character-method", "genotypeMatrix,eSet,character,character-method", "genotypeMatrix,eSet,character,missing-method", "genotypeMatrix,eSet,numeric,character-method", "genotypeMatrix-methods", "method:genotypeMatrix" ] }, { "page": "hgA", "title": "Artificial Human Chromosome for Testing Purposes", "topics": [ "hgA" ] }, { "page": "nullModel-methods", "title": "Create Null Model for Association Test", "topics": [ "nullModel", "nullModel,formula,data.frame-method", "nullModel,formula,missing-method", "nullModel,matrix,factor-method", "nullModel,matrix,numeric-method", "nullModel,missing,factor-method", "nullModel,missing,numeric-method", "nullModel-methods" ] }, { "page": "NullModel-class", "title": "Class 'NullModel'", "topics": [ "class:NullModel", "coefficients,NullModel-method", "length,NullModel-method", "names,NullModel-method", "NullModel", "NullModel-class", "residuals,NullModel-method", "show,NullModel-method", "[,NullModel,index,missing,missing-method" ] }, { "page": "p.adjust-methods", "title": "Adjust p-Value for Multiple Tests", "topics": [ "p.adjust", "p.adjust,AssocTestResultRanges-method", "p.adjust-methods" ] }, { "page": "partitionRegions-methods", "title": "Partition Genomic Regions", "topics": [ "partitionRegions", "partitionRegions,GRanges-method", "partitionRegions,GRangesList-method", "partitionRegions,MaskedBSgenome-method", "partitionRegions-methods" ] }, { "page": "plot-methods", "title": "Plotting functions", "topics": [ "plot", "plot,AssocTestResultRanges,character-method", "plot,AssocTestResultRanges,GRanges-method", "plot,AssocTestResultRanges,missing-method", "plot,GenotypeMatrix,factor-method", "plot,GenotypeMatrix,missing-method", "plot,GenotypeMatrix,numeric-method", "plot,GRanges,character-method", "plot-methods" ] }, { "page": "print-methods", "title": "Print Association Test Results", "topics": [ "print", "print,AssocTestResultRanges-method", "print-methods" ] }, { "page": "qqplot-methods", "title": "Quantile-Quantile Plots", "topics": [ "qqplot", "qqplot,AssocTestResultRanges,AssocTestResultRanges-method", "qqplot,AssocTestResultRanges,missing-method", "qqplot-methods" ] }, { "page": "readGenotypeMatrix-methods", "title": "Read from VCF File", "topics": [ "method:readGenotypeMatrix", "readGenotypeMatrix", "readGenotypeMatrix,character,GRanges-method", "readGenotypeMatrix,character,missing-method", "readGenotypeMatrix,TabixFile,GRanges-method", "readGenotypeMatrix,TabixFile,missing-method", "readGenotypeMatrix-methods" ] }, { "page": "readRegionsFromBedFile", "title": "Read Genomic Regions from BED File", "topics": [ "readRegionsFromBedFile" ] }, { "page": "readSampleNamesFromVcfHeader", "title": "Read Sample Names from VCF File Header", "topics": [ "readSampleNamesFromVcfHeader" ] }, { "page": "readVariantInfo-methods", "title": "Read information about variants from VCF file", "topics": [ "method:readVariantInfo", "readVariantInfo", "readVariantInfo,character,GRanges-method", "readVariantInfo,character,missing-method", "readVariantInfo,TabixFile,GRanges-method", "readVariantInfo,TabixFile,missing-method", "readVariantInfo-methods" ] }, { "page": "sort-methods", "title": "Sort Association Test Results", "topics": [ "sort", "sort,AssocTestResultRanges-method", "sort-methods" ] }, { "page": "split-methods", "title": "Split 'GRanges' Object", "topics": [ "split", "split,GRanges,GRangesList-method", "split-methods" ] }, { "page": "unmasked-datasets", "title": "Unmasked Regions of Human Genomes", "topics": [ "b36Unmasked", "b37Unmasked", "hg18Unmasked", "hg19Unmasked", "hg38Unmasked", "unmasked-datasets" ] }, { "page": "unmaskedRegions", "title": "Extract Unmasked Regions from 'MaskedBSgenome' Object", "topics": [ "unmaskedRegions" ] }, { "page": "VariantInfo-class", "title": "Class 'VariantInfo'", "topics": [ "class:VariantInfo", "MAF", "MAF,VariantInfo-method", "show,VariantInfo-method", "summary,VariantInfo-method", "VariantInfo", "variantInfo", "variantInfo,GRanges-method", "variantInfo,missing-method", "VariantInfo-class" ] }, { "page": "weightFuncs", "title": "Weighting Functions", "topics": [ "betaWeights", "invSdWeights", "logisticWeights", "weightFuncs" ] }, { "page": "weights-methods", "title": "Extract Contribution Weights of Variants", "topics": [ "weights", "weights,AssocTestResult-method", "weights,AssocTestResultRanges-method", "weights-methods" ] } ], "_readme": "https://github.com/bioc/podkat/raw/HEAD/README.md", "_rundeps": [ "askpass", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bitops", "BSgenome", "cigarillo", "codetools", "cpp11", "crayon", "curl", "formatR", "futile.logger", "futile.options", "generics", "GenomicAlignments", "GenomicRanges", "httr", "IRanges", "jsonlite", "lambda.r", "lattice", "Matrix", "matrixStats", "mime", "openssl", "R6", "Rcpp", "RCurl", "restfulr", "Rhtslib", "rjson", "Rsamtools", "rtracklayer", "S4Vectors", "Seqinfo", "snow", "sys", "XML", "XVector", "yaml" ], "_sysdeps": [ { "shlib": "libcurl", "package": "libcurl4t64", "headers": "libcurl4-openssl-dev", "source": "curl", "version": "8.18.0-1ubuntu2.8", "name": "curl", "homepage": "https://curl.se/", "description": "easy-to-use client-side URL transfer library (OpenSSL flavour)" }, { "shlib": "libbz2", "package": "libbz2-1.0", "headers": "libbz2-dev", "source": "bzip2", "version": "1.0.8-6ubuntu0.1", "name": "bzip2", "homepage": "https://sourceware.org/bzip2/", "description": "high-quality block-sorting file compressor library - runtime" }, { "shlib": "liblzma", "package": "liblzma5", "headers": "liblzma-dev", "source": "xz-utils", "version": "5.8.3-1ubuntu0.1", "name": "xz-utils", "homepage": "https://tukaani.org/xz/", "description": "XZ-format compression library" }, { "shlib": "libz", "package": "zlib1g", "headers": "zlib1g-dev", "source": "zlib", "version": "1:1.3.dfsg+really1.3.1-1ubuntu3.2", "name": "zlib", "homepage": "http://zlib.net/", "description": "compression library - runtime" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "podkat.Rnw", "filename": "podkat.pdf", "title": "PODKAT - An R Package for Association Testing Involving Rare and Private Variants", "engine": "knitr::knitr", "headings": [ "Introduction", "Installation", "PODKAT for the Impatient", "Training a Null Model", "Selection of Regions of Interest", "Performing an Association Test", "Analyzing and Visualizing Results", "Miscellanea", "More Details About PODKAT", "Future Extensions", "How to Cite This Package" ], "created": "2015-03-31 18:31:58", "modified": "2024-04-23 10:09:59", "commits": 12 } ], "_score": 5.021189299069938, "_indexed": true, "_nocasepkg": "podkat", "_universes": [ "bioc", "ubod" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.45.0", "date": "2026-11-01T14:17:10.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/7935dc8dffbdb15f3216bcea8fc18b0fe1f094f1275cb1bc00570b00a5ab4be5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.7.0", "os": "linux", "version": "1.45.0", "date": "2026-11-01T14:38:08.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/b323a17731fcad5f73e61318da1bcd09dac617b77ba9b403039c38e310bcb96b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.2", "os": "linux", "version": "1.45.0", "date": "2026-11-01T14:17:28.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/44aea160eb10f54ecacf71696fca3298d430076c4ee0c7278fdf27538809479d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.2", "os": "linux", "version": "1.45.0", "date": "2026-11-01T14:37:02.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/72a00a464e3c54aeb72f4b171d6acf52e042fd0cccf331821a2992a7479cdd30", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.5.3", "os": "mac", "version": "1.45.0", "date": "2026-11-01T17:03:52.000Z", "arch": "aarch64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/8c87194b2d807901f321523dd3a12fd686ba5b99b1e6a222eac787e79e04b600", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.5.3", "os": "mac", "version": "1.45.0", "date": "2026-11-01T17:05:50.000Z", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/1a84f0146f4c81514ae510453a1ea14228e12e16add766c661c1264bb42e5cad", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.2", "os": "mac", "version": "1.45.0", "date": "2026-11-01T17:05:13.000Z", "arch": "aarch64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/abf196c259eca65307751a013f2251779bebe6498ee27f3c1bfd9f62a2a9fa11", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.2", "os": "mac", "version": "1.45.0", "date": "2026-11-01T17:05:04.000Z", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/9b56925582214267a2640289b897e28ed434267b8f6c4db70b1b2480f10ac95e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.0", "os": "wasm", "version": "1.45.0", "date": "2026-11-01T14:35:27.000Z", "arch": "emscripten", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/0ecd8048605833db6e27d32e25b1541592d2db69c43c214c7922b25166812908", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.7.0", "os": "win", "version": "1.45.0", "date": "2026-11-01T14:17:53.000Z", "arch": "aarch64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/87f99416033555370ea61e20a1a7805b6e175640dd155a069089a68f6f496904", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.7.0", "os": "win", "version": "1.45.0", "date": "2026-11-01T14:16:50.000Z", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/04a6bfb846a1715d8ed69eefe9b9c56641bce2b971e74d6d3c13d4f189783558", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.5.3", "os": "win", "version": "1.45.0", "date": "2026-11-01T14:16:25.000Z", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/51969e8372e71287696cb7f0b72bf49aaae41971412405df5f267b14acf502aa", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.2", "os": "win", "version": "1.45.0", "date": "2026-11-01T14:18:39.000Z", "arch": "aarch64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/79df4b15cbc8c17df4ab97781789d984a6607769cbcbe5a7acbe25a18f0ef36e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" }, { "r": "4.6.2", "os": "win", "version": "1.45.0", "date": "2026-11-01T14:16:12.000Z", "arch": "x86_64", "commit": "a5ee2c46535d6071db4ae2927c3d98390238b392", "fileid": "https://r2.ropensci.org/170bccc0a14243f0549e36245f49fcf215449a01f9a8dcee2d2db81fae2bba99", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310430704" } ] }