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a GInteractions with tidyverse-like 'filter'", "topics": [ "dplyr-filter", "filter.GInteractions" ] }, { "page": "dplyr-group_by", "title": "Group GInteractions by columns", "topics": [ "dplyr-group_by", "group_by.DelegatingGInteractions", "group_by.GInteractions", "ungroup.GroupedGInteractions" ] }, { "page": "dplyr-mutate", "title": "Mutate columns from a GInteractions object", "topics": [ "dplyr-mutate", "mutate.GInteractions" ] }, { "page": "dplyr-rename", "title": "Rename columns from a GInteractions with tidyverse-like 'rename'", "topics": [ "dplyr-rename", "rename.GInteractions" ] }, { "page": "dplyr-select", "title": "Select columns within GInteractions metadata columns", "topics": [ "dplyr-select", "select.GInteractions" ] }, { "page": "dplyr-slice", "title": "Slice a GInteractions rows by their index", "topics": [ "dplyr-slice", "slice.GInteractions" ] }, { "page": "dplyr-summarize", "title": "Summarize GInteractions per group", "topics": [ "dplyr-summarise", "dplyr-summarize", "summarise.GroupedGInteractions", "summarize.GroupedGInteractions" ] }, { "page": "ginteractions-anchor", "title": "Manage GInteractions anchors with plyranges", "topics": [ "anchor.AnchoredPinnedGInteractions", "anchor_3p.AnchoredPinnedGInteractions", "anchor_3p.PinnedGInteractions", "anchor_5p.AnchoredPinnedGInteractions", "anchor_5p.PinnedGInteractions", "anchor_center.AnchoredPinnedGInteractions", "anchor_center.PinnedGInteractions", "anchor_end.AnchoredPinnedGInteractions", "anchor_end.PinnedGInteractions", "anchor_start.AnchoredPinnedGInteractions", "anchor_start.PinnedGInteractions", "ginteractions-anchor", "unanchor.AnchoredPinnedGInteractions" ] }, { "page": "ginteractions-count-overlaps", "title": "Count overlaps between a query GInteractions and a GRanges", "topics": [ "count_overlaps.GInteractions", "count_overlaps.PinnedGInteractions", "count_overlaps_directed.GInteractions", "count_overlaps_directed.PinnedGInteractions", "ginteractions-count-overlaps" ] }, { "page": "ginteractions-export", "title": "Export GInteractions as 'bedpe' or 'pairs' files", "topics": [ "ginteractions-export", "write_bedpe", "write_pairs" ] }, { "page": "ginteractions-filter-overlaps", "title": "Filter GInteractions overlapping with a GRanges", "topics": [ "filter_by_non_overlaps.GInteractions", "filter_by_non_overlaps.PinnedGInteractions", "filter_by_overlaps.GInteractions", "filter_by_overlaps.PinnedGInteractions", "ginteractions-filter-overlaps" ] }, { "page": "ginteractions-find-overlaps", "title": "Find overlaps between a query GInteractions and a GRanges", "topics": [ "find_overlaps.GInteractions", "find_overlaps.PinnedGInteractions", "find_overlaps_directed.GInteractions", "find_overlaps_directed.PinnedGInteractions", "ginteractions-find-overlaps" ] }, { "page": "ginteractions-join-overlap-left", "title": "Join overlaps between a query GInteractions and a GRanges", "topics": [ "ginteractions-join-overlap-left", "join_overlap_left.GInteractions", "join_overlap_left.PinnedGInteractions", "join_overlap_left_directed.GInteractions", "join_overlap_left_directed.PinnedGInteractions" ] }, { "page": "group-group_data", "title": "GInteractions grouping metadata", "topics": [ "group-group_data", "groups.GroupedGInteractions", "group_data.GroupedGInteractions", "group_indices.GroupedGInteractions", "group_keys.GroupedGInteractions", "group_size.GroupedGInteractions", "group_vars.GInteractions", "group_vars.GroupedGInteractions", "n_groups.GroupedGInteractions" ] }, { "page": "pair-granges", "title": "Pairwise combination of a GRanges object", "topics": [ "pair_granges" ] }, { "page": "ginteractions-pin", "title": "Pin GInteractions by anchors set (anchors1 or anchors2).", "topics": [ "ginteractions-pin", "pin", "pin,AnchoredPinnedGInteractions,character-method", "pin,AnchoredPinnedGInteractions,numeric-method", "pin,GInteractions,character-method", "pin,GInteractions,numeric-method", "pin,GroupedGInteractions,character-method", 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