{ "_id": "6a4984736d67900babdf82ae", "Package": "plier", "Title": "Implements the Affymetrix PLIER algorithm", "Version": "1.83.0", "Author": "Affymetrix Inc., Crispin J Miller, PICR", "Description": "The PLIER (Probe Logarithmic Error Intensity Estimate)\nmethod produces an improved signal by accounting for\nexperimentally observed patterns in probe behavior and handling\nerror at the appropriately at low and high signal values.", "Maintainer": "Crispin Miller ", "License": "GPL (>= 2)", "biocViews": "Software", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:30:56 UTC", "RemoteUrl": "https://github.com/bioc/plier", "RemoteRef": "HEAD", "RemoteSha": "a942244e615c6decbc8f1fbee80c959940c98d4e", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-23 20:28:39 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "plier_1.83.0.tar.gz", "_fileid": "https://r2.ropensci.org/24419924681914b5f1a32fc4c994b10dba336921a6a2d4cb3816de8f690d138b", "_filesize": 105184, "_sha256": "24419924681914b5f1a32fc4c994b10dba336921a6a2d4cb3816de8f690d138b", "_expires": "2026-10-12T22:08:49.000Z", "_created": "2026-06-23T20:28:39.000Z", "_published": "2026-07-04T22:08:51.564Z", "_bioccheck": { "error": 4, "warning": 0, "note": 10 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248", "_status": "success", "_upstream": "https://github.com/bioc/plier", "_commit": { "id": "a942244e615c6decbc8f1fbee80c959940c98d4e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379456 }, "_maintainer": { "name": "Crispin Miller", "email": "cmiller@picr.man.ac.uk" }, "_distro": "resolute", "_jobs": [ { "job": 85170937449, "time": 145, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7832659244" }, { "job": 85170937497, "time": 136, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7832656639" }, { "job": 85170937492, "time": 138, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7832656861" }, { "job": 85170937504, "time": 129, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7832653961" }, { "job": 85170937448, "time": 131, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7832654335" }, { "job": 85170937493, "time": 100, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7832641634" }, { "job": 85170937446, "time": 202, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "7832681710" }, { "job": 85170937451, "time": 92, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7832639225" }, { "job": 85170937469, "time": 469, "config": "macos-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7832778040" }, { "job": 85170937277, "time": 157, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7832604614" }, { "job": 85170937439, "time": 102, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7832642404" }, { "job": 85170937399, "time": 85, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7832635981" }, { "job": 85170937396, "time": 83, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7832635894" }, { "job": 85170937380, "time": 66, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7832629751" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "affy", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "methods", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.83.0", "bioc": "3.24" }, { "branch": "release", "version": "1.82.0", "bioc": "3.23" } ], "_topics": [ "software", "cpp" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 441, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_mentions": 6, "_searchresults": 158, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/plier.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "justPlier" ], "_help": [ { "page": "justPlier", "title": "Implements the PLIER algorithm", "topics": [ "justPlier" ] } ], "_rundeps": [ "affy", "affyio", "Biobase", "BiocGenerics", "BiocManager", "generics", "preprocessCore" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 4.277838333002047, "_indexed": true, "_nocasepkg": "plier", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.83.0", "date": "2026-06-23T20:31:01.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/7bffd515d29357a539c46e449888d722f68acac59502a0ed666dfd9ae7c2ee0a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.7.0", "os": "linux", "version": "1.83.0", "date": "2026-06-23T20:30:58.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/94e5e0f5499ea28fb71f644339cd93e1675ea1f8d3f70b8110ae4001f7070cfa", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.6.0", "os": "linux", "version": "1.83.0", "date": "2026-06-23T20:30:54.000Z", "distro": "resolute", "arch": "aarch64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/78b05c20992c147755b975f7252a6350a7210d30ac832c41191d1c02543cc426", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.6.0", "os": "linux", "version": "1.83.0", "date": "2026-06-23T20:30:50.000Z", "distro": "resolute", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/016b2506259eddeed06e98f1ed282c3c191b68432a27fdfa7018168c091bc4b9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.5.3", "os": "mac", "version": "1.83.0", "date": "2026-06-23T20:30:17.000Z", "arch": "aarch64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/d49a7b2ee4e982bd4984ed1b302ed78ea44d00e4b58a9175b774085e9e73ced5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.5.3", "os": "mac", "version": "1.83.0", "date": "2026-06-23T20:31:50.000Z", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/1d67bfafb03a913a9300c8d1c6c5b194b73f60fa25280989cd1466185d852902", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.6.0", "os": "mac", "version": "1.83.0", "date": "2026-06-23T20:30:12.000Z", "arch": "aarch64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/0a5d34012c4cf7e8d0410eb81d42acfbd9ed41cf097593bf75354516115a1eca", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.6.0", "os": "mac", "version": "1.83.0", "date": "2026-06-23T20:35:17.000Z", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/1952f5ad023517a6914989f49e93bec942a441063b5f62d4cf001eeb97f33334", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.6.0", "os": "wasm", "version": "1.83.0", "date": "2026-06-23T20:30:35.000Z", "arch": "emscripten", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/9d0509be9e870ff799372dca4507ba9ace959d6956df9295dec261bfc6c553a1", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.7.0", "os": "win", "version": "1.83.0", "date": "2026-06-23T20:29:42.000Z", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/242a7e97dde93fa29150b823e39486fc52624cab93daa8657aa607c9f96767b9", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.5.3", "os": "win", "version": "1.83.0", "date": "2026-06-23T20:29:51.000Z", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/353a667f9b93f198f5c8668f8e4749b3187118589831a8d381c66e6ff5b039c0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" }, { "r": "4.6.0", "os": "win", "version": "1.83.0", "date": "2026-06-23T20:29:38.000Z", "arch": "x86_64", "commit": "a942244e615c6decbc8f1fbee80c959940c98d4e", "fileid": "https://r2.ropensci.org/f6338ba6d8f783920b76f9bd1d8a2a06e8c319be97baadd7c22d7fb810a9dc3b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28054724248" } ] }