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  "Package": "peakCombiner",
  "Title": "The R package to curate and merge enriched genomic regions into\nconsensus peak sets",
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  "Description": "peakCombiner, a fully R based, user-friendly, transparent,\nand customizable tool that allows even novice R users to create\na high-quality consensus peak list. The modularity of its\nfunctions allows an easy way to optimize input and output data.\nA broad range of accepted input data formats can be used to\ncreate a consensus peak set that can be exported to a file or\nused as the starting point for most downstream peak analyses.",
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  "Date/Publication": "2026-04-28 13:05:38 UTC",
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      "title": "peakCombiner: The R package to curate and merge enriched genomic regions into consensus peak sets",
      "author": "Markus Muckenhuber, Charlotte Soneson, Michael Stadler, Kathleen Sprouffske",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Abstract",
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        "Standard genomic regions format",
        "Install peakCombiner",
        "An overview of a complete run",
        "Prepare input data",
        "Quick start",
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        "Load from GenomicRanges object",
        "Explained in detail",
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        "Working in 1-based space",
        "Center and expand regions",
        "Run center and expand",
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        "Define the 'center'",
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        "Run function mutliple times",
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        "In how many samples should a region be found?",
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        "References"
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