{ "_id": "6a3aa24744e65c5976a7ea31", "Package": "pcaMethods", "Maintainer": "Henning Redestig ", "License": "GPL (>= 3)", "Title": "A collection of PCA methods", "LazyLoad": "Yes", "Author": "Wolfram Stacklies, Henning Redestig, Kevin Wright", "Authors@R": "c(person(given=\"Wolfram\",\nfamily=\"Stacklies\",\nrole=c(\"aut\")),\nperson(given=\"Henning\",\nfamily=\"Redestig\",\nemail=\"henning.red@gmail.com\",\ncomment=c(ORCID=\"0000-0003-2130-9288\"),\nrole=c(\"aut\",\"cre\")),\nperson(given=\"Kevin\",\nfamily=\"Wright\",\ncomment=c(ORCID=\"0000-0002-0617-8673\"),\nrole=\"aut\"))", "SystemRequirements": "Rcpp", "Description": "Provides Bayesian PCA, Probabilistic PCA, Nipals PCA,\nInverse Non-Linear PCA and the conventional SVD PCA. A cluster\nbased method for missing value estimation is included for\ncomparison. BPCA, PPCA and NipalsPCA may be used to perform PCA\non incomplete data as well as for accurate missing value\nestimation. A set of methods for printing and plotting the\nresults is also provided. All PCA methods make use of the same\ndata structure (pcaRes) to provide a common interface to the\nPCA results. Initiated at the Max-Planck Institute for\nMolecular Plant Physiology, Golm, Germany.", "Version": "2.5.0", "URL": "https://github.com/hredestig/pcamethods", "BugReports": "https://github.com/hredestig/pcamethods/issues", "Encoding": "UTF-8", "Collate": "'derrorHierarchic.R' 'errorHierarchic.R' 'AllClasses.R'\n'AllGenerics.R' 'BPCA_dostep.R' 'BPCA_initmodel.R' 'bpca.R'\n'checkData.R' 'forkNlpcaNet.R' 'kEstimate.R' 'kEstimateFast.R'\n'lineSearch.R' 'llsImpute.R' 'methods-ExpressionSet.R'\n'methods-nniRes.R' 'methods-pcaRes.R' 'nipalsPca.R' 'nlpca.R'\n'optiAlgCgd.R' 'orth.R' 'pca.R' 'pcaMethods-package.R' 'ppca.R'\n'prep.R' 'repmat.R' 'robustPca.R' 'sortFeatures.R'\n'svdImpute.R' 'vector2matrices.R' 'xval.R'", "Packaged": { "Date": "2026-06-23 15:05:10 UTC", "User": "root" }, "biocViews": "Bayesian", "RoxygenNote": "6.1.1", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:31:56 UTC", "RemoteUrl": "https://github.com/bioc/pcaMethods", "RemoteRef": "HEAD", 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