{ "_id": "6a1ac1601d7bb097a09d8416", "Package": "orthogene", "Type": "Package", "Title": "Gene mapping made easy", "Version": "1.19.3", "Authors@R": "c(\nperson(given = \"Brian\",\nfamily = \"Schilder\",\nrole = c(\"cre\",\"fnd\"),\nemail = \"brian_schilder@alumni.brown.edu\",\ncomment = c(ORCID = \"0000-0001-5949-2191\"))\n)", "Description": "`orthogene` is an R package for easy mapping of\northologous genes across hundreds of species. It pulls\nup-to-date gene ortholog mappings across **700+ organisms**. It\nalso provides various utility functions to aggregate/expand\ncommon objects (e.g. data.frames, gene expression matrices,\nlists) using **1:1**, **many:1**, **1:many** or **many:many**\ngene mappings, both within- and between-species.", "URL": "https://github.com/neurogenomics/orthogene", "BugReports": "https://github.com/neurogenomics/orthogene/issues", "License": "GPL-3", "VignetteBuilder": "knitr", "biocViews": "Genetics, ComparativeGenomics, Preprocessing, Phylogenetics,\nTranscriptomics, GeneExpression", "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Config/testthat/edition": "3", "Config/rcmdcheck/_R_CHECK_FORCE_SUGGESTS_": "false", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev make libicu-dev libpng-dev libuv1-dev\nlibssl-dev libx11-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-29 20:22:42 UTC", "RemoteUrl": "https://github.com/bioc/orthogene", "RemoteRef": "HEAD", "RemoteSha": "9d34d75e099347b1474dc38184d1c6c6036487ce", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:20:07 UTC", "User": "root" }, "Author": "Brian Schilder [cre, fnd] (ORCID:\n)", "Maintainer": "Brian Schilder ", "MD5sum": "b73c592253e2003814642a13382e3db3", "_user": "bioc", "_type": "src", "_file": "orthogene_1.19.3.tar.gz", "_fileid": "5ea8eabe6565dfcb3577efa70c1b2fbd015ad1309141c9b8255552e7bb71c71b", "_filesize": 2223762, "_sha256": "5ea8eabe6565dfcb3577efa70c1b2fbd015ad1309141c9b8255552e7bb71c71b", "_created": "2026-05-30T07:20:07.000Z", "_published": "2026-05-30T10:52:16.392Z", "_jobs": [ { "job": 78633084892, "time": 221, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7306439255" }, { "job": 78633084905, "time": 1137, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7306540159" }, { "job": 78633084894, "time": 1102, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7306536717" }, { "job": 78633084914, "time": 650, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7307599485" }, { "job": 78633084927, "time": 622, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7307597308" }, { "job": 78632835746, "time": 283, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306415416" }, { "job": 78633084893, "time": 201, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306437085" }, { "job": 78633084913, "time": 896, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7306515351" }, { "job": 78633084915, "time": 806, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7306504777" }, { "job": 78633084912, "time": 735, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7306496982" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677820898", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/orthogene", "_commit": { "id": "9d34d75e099347b1474dc38184d1c6c6036487ce", "author": "bschilder ", "committer": "bschilder ", "message": "Drop curl::has_internet() from gprofiler tests — unstated dep\n\nR CMD check on GHA flagged the tests added in d0949ff with:\n\n > checking for unstated dependencies in 'tests' ... WARNING\n '::' or ':::' import not declared from: 'curl'\n\n`curl` isn't in our Imports/Suggests, so calling `curl::has_internet()`\ndirectly in tests is incorrect. Drop the manual `skip_if_offline()`\nhelper entirely — the existing `tryCatch` + `testthat::skip()` on API\nerror already handles the offline case gracefully (and is what every\nother gprofiler-touching test in the suite uses).\n\nCo-Authored-By: Claude Opus 4.7 (1M context) \n", "time": 1777494162 }, "_maintainer": { "name": "Brian Schilder", "email": "brian_schilder@alumni.brown.edu", "login": "bschilder", "linkedin": "in/brian-schilder", "orcid": "0000-0001-5949-2191", "twitter": "@BMSchilder", "description": "🧠 Brains, 🧬 genes, and 👾 learning machines!", "uuid": 34280215 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "homologene", 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