{ "_id": "6a1aeeee1d7bb097a09f5eb3", "Package": "oppar", "Type": "Package", "Title": "Outlier profile and pathway analysis in R", "Version": "1.41.0", "Date": "2016", "Authors@R": "c(\nperson(\"Chenwei\", \"Wang\", email = \"chenwei.wang@qut.edu.au\", role = \"aut\"),\nperson(\"Alperen\", \"Taciroglu\", role = \"aut\"),\nperson(\"Stefan R\", \"Maetschke\", role = \"aut\"),\nperson(\"Colleen C\", \"Nelson\", role = \"aut\"),\nperson(\"Mark\", \"Ragan\", role = \"aut\"),\nperson(\"Melissa\", \"Davis\", email = \"davis.m@wehi.edu.au\", role = \"aut\"),\nperson(\"Soroor\", \"Hediyeh zadeh\", email = \"hediyehzadeh.s@wehi.edu.au\",role = \"cre\"),\nperson(\"Momeneh\",\"Foroutan\", email= \"mforoutan@student.unimelb.edu.au\", role = \"ctr\"))", "Description": "The R implementation of mCOPA package published by Wang et\nal. (2012). Oppar provides methods for Cancer Outlier profile\nAnalysis. Although initially developed to detect outlier genes\nin cancer studies, methods presented in oppar can be used for\noutlier profile analysis in general. In addition, tools are\nprovided for gene set enrichment and pathway analysis.", "biocViews": "Pathways, GeneSetEnrichment, SystemsBiology, GeneExpression,\nSoftware", "License": "GPL-2", "LazyData": "true", "Collate": "'class_OPPARList.R' 'class_nuchar.R' 'getSampleOutlier.R'\n'getSubtypeProbes.R' 'gsva.R' 'opa-generic-methods.R' 'oppar.R'\n'utils.R' 'zzz.R'", "RoxygenNote": "5.0.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libmagick++-dev gsfonts libicu-dev libpng-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:43:19 UTC", "RemoteUrl": "https://github.com/bioc/oppar", "RemoteRef": "HEAD", "RemoteSha": "892e38d188fe3ce5531183b48c5559e654205f11", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-30 09:41:21 UTC", "User": "root" }, "Author": "Chenwei Wang [aut],\nAlperen Taciroglu [aut],\nStefan R Maetschke [aut],\nColleen C Nelson [aut],\nMark Ragan [aut],\nMelissa Davis [aut],\nSoroor Hediyeh 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