{ "_id": "6aca6bcffe5cc25786e88d2e", "Package": "ontoProc2", "Date": "2026-08-28", "Title": "Ontology Facilities Based on INCAtools Semantic SQL", "Version": "0.99.32", "Authors@R": "c(person(\n\"Vincent\", \"Carey\", role = c(\"aut\", \"cre\"),\nemail = \"stvjc@channing.harvard.edu\",\ncomment = c(ORCID = \"0000-0003-4046-0063\")),\nperson(\"Anthropic-Claude\", \"Sonnet4.6\", role=\"eng\"),\nperson(\n\"NIH NHGRI 2U24HG004059-17\",\nrole = \"fnd\"\n)\n)", "Description": "This package provides ontology facilities based on\nINCAtools Semantic SQL. Tooling is provided to retrieve and\ncache SQLite databases representing curated ontologies.\nontologyIndex ontology_index instances can be produced.\nAnthropic's Claude was used in the development of S7 classes\nand methods and in the production of documentation.", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "biocViews": "Infrastructure, DataRepresentation, Pathways, SingleCell", "URL": "https://github.com/vjcitn/ontoProc2", "BugReports": "https://github.com/vjcitn/ontoProc2/issues", "Config/roxygen2/version": "8.1.0", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "libfontconfig1-dev libfreetype6-dev libglpk-dev\nlibicu-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-09-03 11:08:21 UTC", "RemoteUrl": "https://github.com/bioc/ontoProc2", "RemoteRef": "HEAD", "RemoteSha": "f18431d2289961758a944899d775883e825f002b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 15:12:56 UTC", "User": "root" }, "Author": "Vincent Carey [aut, cre] (ORCID:\n),\nAnthropic-Claude Sonnet4.6 [eng],\nNIH NHGRI 2U24HG004059-17 [fnd]", "Maintainer": "Vincent Carey ", "_user": "bioc", "_type": "src", "_file": "ontoProc2_0.99.32.tar.gz", "_fileid": "https://r2.ropensci.org/51e3cdd2986774d2184364e9481f32c837fc5065f71b0590058e756aa1b53c19", "_filesize": 2764074, "_sha256": "51e3cdd2986774d2184364e9481f32c837fc5065f71b0590058e756aa1b53c19", "_expires": "2027-01-18T16:46:05.000Z", "_created": "2026-10-10T15:12:56.000Z", "_published": "2026-10-10T16:46:07.856Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38062367053", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 10 }, "_upstream": "https://github.com/bioc/ontoProc2", "_commit": { "id": "f18431d2289961758a944899d775883e825f002b", "author": "vjcitn ", "committer": "vjcitn ", "message": "add ggraph/graphlayouts alternatives to onto_plot2 (Rgraphviz-free)\n\nIntroduces onto_plot2_sugiyama and onto_plot2_stress as ggplot2-based\nalternatives using igraph + ggraph + graphlayouts. All visual constants\nare collected in onto_plot2_params() so callers can tune appearance\nwithout touching individual arguments. 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