{ "_id": "6a10471cacfb0bcc41c9ed9c", "Package": "onlineFDR", "Version": "2.21.0", "Date": "2023-04-12", "Title": "Online error rate control", "Authors@R": "c(person(c(\"David\", \"S.\"), \"Robertson\", role = c(\"aut\", \"cre\"),\nemail = \"david.robertson@mrc-bsu.cam.ac.uk\"),\nperson(\"Lathan\", \"Liou\", role = \"aut\"),\nperson(\"Aaditya\", \"Ramdas\", role = \"aut\"),\nperson(\"Adel\", \"Javanmard\", role = \"ctb\"),\nperson(\"Andrea\", \"Montanari\", role = \"ctb\"),\nperson(\"Jinjin\", \"Tian\", role = \"ctb\"),\nperson(\"Tijana\", \"Zrnic\", role = \"ctb\"),\nperson(c(\"Natasha\", \"A.\"), \"Karp\", role = \"aut\"))", "Description": "This package allows users to control the false discovery\nrate (FDR) or familywise error rate (FWER) for online multiple\nhypothesis testing, where hypotheses arrive in a stream. In\nthis framework, a null hypothesis is rejected based on the\nevidence against it and on the previous rejection decisions.", "URL": "https://dsrobertson.github.io/onlineFDR/index.html", "License": "GPL-3", "RoxygenNote": "7.2.1", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "biocViews": "MultipleComparison, Software, StatisticalMethod", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:48:10 UTC", "RemoteUrl": "https://github.com/bioc/onlineFDR", "RemoteRef": "HEAD", "RemoteSha": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-10 09:34:56 UTC", "User": "root" }, "Author": "David S. Robertson [aut, cre],\nLathan Liou [aut],\nAaditya Ramdas [aut],\nAdel Javanmard [ctb],\nAndrea Montanari [ctb],\nJinjin Tian [ctb],\nTijana Zrnic [ctb],\nNatasha A. Karp [aut]", "Maintainer": "David S. Robertson ", "MD5sum": "cd218ef626ee5de35a01a1cfb6e00ff6", "_user": "bioc", "_type": "src", "_file": "onlineFDR_2.21.0.tar.gz", "_fileid": "75ada752168f4bd851d0f0142efa3030299d2ef6cdb8f54e76cac3a05ee822e1", "_filesize": 2337845, "_sha256": "75ada752168f4bd851d0f0142efa3030299d2ef6cdb8f54e76cac3a05ee822e1", "_created": "2026-05-10T09:34:56.000Z", "_published": "2026-05-22T12:07:56.475Z", "_jobs": [ { "job": 77376208843, "time": 162, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "6902715739" }, { "job": 77376209042, "time": 151, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "6902714793" }, { "job": 77376209030, "time": 204, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6902720357" }, { "job": 77376209653, "time": 178, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6902717519" }, { "job": 77376209340, "time": 213, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6902721287" }, { "job": 77376209428, "time": 130, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6902819273" }, { "job": 77376209088, "time": 324, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "6902741025" }, { "job": 77376208942, "time": 128, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6902816843" }, { "job": 77376208847, "time": 361, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6902751420" }, { "job": 77376208680, "time": 255, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6902698540" }, { "job": 77376208465, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7160091622" }, { "job": 77376208873, "time": 133, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6902712873" }, { "job": 77376209487, "time": 137, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6902713349" }, { "job": 77376209324, "time": 144, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6902714026" } ], "_bioccheck": { "error": 0, "warning": 3, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/onlineFDR", "_commit": { "id": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380490 }, "_maintainer": { "name": "David S. Robertson", "email": "david.robertson@mrc-bsu.cam.ac.uk", "login": "dsrobertson", "uuid": 38322298 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppProgress", "role": "LinkingTo" }, { "package": "stats", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "covr", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.21.0", "bioc": "3.24" }, { "branch": "release", "version": "2.20.0", "bioc": "3.23" } ], "_topics": [ "multiplecomparison", "software", "statisticalmethod", "error-rate-control", "fdr", "fwer", "hypothesis-testing", "cpp" ], "_stars": 15, "_contributors": [ { "user": "dsrobertson", "count": 182, "uuid": 38322298 }, { "user": "lathanliou", "count": 140, "uuid": 35985619 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "nikotinz", "count": 9, "uuid": 41270344 }, { "user": "pc494", "count": 4, "uuid": 32455330 }, { "user": "jwokaty", "count": 2, "uuid": 1744257 }, { "user": "latlio", "count": 2, "uuid": 10098481 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "lshep", "count": 1, "uuid": 18724380 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 272, "source": "https://www.bioconductor.org/packages/stats/bioc/onlineFDR" }, "_mentions": 1, "_devurl": "https://github.com/dsrobertson/onlinefdr", "_searchresults": 48, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/onlineFDR.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/dsrobertson/onlinefdr", "_realowner": "bioc", "_cranurl": false, "_exports": [ "ADDIS", "ADDIS_spending", "Alpha_investing", "Alpha_spending", "BatchBH", "BatchPRDS", "BatchStBH", "bonfInfinite", "LOND", "LONDstar", "LORD", "LORDdep", "LORDstar", "online_fallback", "SAFFRON", "SAFFRONstar", "setBound", "StoreyBH", "supLORD" ], "_help": [ { "page": "onlineFDR-package", "title": "onlineFDR: A package for online error rate control", "topics": [ "onlineFDR-package" ] }, { "page": "ADDIS", "title": "ADDIS: Adaptive discarding algorithm for online FDR control", "topics": [ "ADDIS" ] }, { "page": "ADDIS_spending", "title": "ADDIS-spending: Adaptive discarding algorithm for online FWER control", "topics": [ "ADDIS_spending" ] }, { "page": "Alpha_investing", "title": "Alpha-investing for online FDR control", "topics": [ "Alpha_investing" ] }, { "page": "Alpha_spending", "title": "Alpha-spending for online FWER control", "topics": [ "Alpha_spending" ] }, { "page": "BatchBH", "title": "BatchBH: Online batch FDR control using the BH procedure", "topics": [ "BatchBH" ] }, { "page": "BatchPRDS", "title": "BatchPRDS: Online batch FDR control under Positive Dependence", "topics": [ "BatchPRDS" ] }, { "page": "BatchStBH", "title": "BatchStBH: Online batch FDR control using the St-BH procedure", "topics": [ "BatchStBH" ] }, { "page": "bonfInfinite", "title": "Online FDR control based on a Bonferroni-like test", "topics": [ "bonfInfinite" ] }, { "page": "LOND", "title": "LOND: Online FDR control based on number of discoveries", "topics": [ "LOND" ] }, { "page": "LONDstar", "title": "LONDstar: Asynchronous online mFDR control based on number of discoveries", "topics": [ "LONDstar" ] }, { "page": "LORD", "title": "LORD: Online FDR control based on recent discovery", "topics": [ "LORD" ] }, { "page": "LORDdep", "title": "LORD (dep): Online FDR control based on recent discovery for dependent p-values", "topics": [ "LORDdep" ] }, { "page": "LORDstar", "title": "LORDstar: Asynchronous online mFDR control based on recent discovery", "topics": [ "LORDstar" ] }, { "page": "online_fallback", "title": "Online fallback procedure for FWER control", "topics": [ "online_fallback" ] }, { "page": "onlineFDR-deprecated", "title": "Deprecated functions in package 'onlineFDR'", "topics": [ "onlineFDR-deprecated" ] }, { "page": "SAFFRON", "title": "SAFFRON: Adaptive online FDR control", "topics": [ "SAFFRON" ] }, { "page": "SAFFRONstar", "title": "SAFFRONstar: Adaptive online mFDR control for asynchronous testing", "topics": [ "SAFFRONstar" ] }, { "page": "setBound", "title": "setBound", "topics": [ "setBound" ] }, { "page": "StoreyBH", "title": "StoreyBH: Offline FDR control using the St-BH procedure", "topics": [ "StoreyBH" ] }, { "page": "supLORD", "title": "supLORD: Online control of the false discovery exceedance (FDX) and the FDR at stopping times", "topics": [ "supLORD" ] } ], "_pkglogo": "https://github.com/bioc/onlineFDR/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/bioc/onlineFDR/raw/HEAD/README.md", "_rundeps": [ "cli", "crayon", "glue", "hms", "lifecycle", "pkgconfig", "prettyunits", "progress", "R6", "Rcpp", "RcppProgress", "rlang", "vctrs" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "advanced-usage.Rmd", "filename": "advanced-usage.html", "title": "Advanced usage of onlineFDR", "engine": "knitr::rmarkdown", "headings": [ "Brief Background of the onlineFDR algorithms", "Variations to the default options", "Common arguments", "LOND", "LORD", "SAFFRON", "ADDIS", "Alpha-spending and online fallback", "ADDIS-spending", "Asynchronous testing" ], "created": "2020-10-30 15:22:26", "modified": "2022-08-25 16:33:53", "commits": 8 }, { "source": "theory.Rmd", "filename": "theory.html", "title": "The theory behind onlineFDR", "engine": "knitr::rmarkdown", "headings": [ "FDR Control", "LOND", "LORD", "SAFFRON", "Alpha-investing", "ADDIS", "FWER Control", "Alpha-spending", "Online Fallback", "ADDIS-spending", "Accounting for dependent p-values" ], "created": "2020-10-30 15:22:26", "modified": "2022-08-25 16:33:53", "commits": 5 }, { "source": "onlineFDR.Rmd", "filename": "onlineFDR.html", "title": "Managing online multiple hypothesis testing using the onlineFDR package", "author": "David S. Robertson, Lathan Liou, Aaditya Ramdas and Natasha A. Karp", "engine": "knitr::rmarkdown", "headings": [ "What is onlineFDR?", "Which algorithm do I use?", "Frequently Asked Questions", "Quick Start", "General Info", "Input data", "What happens to the input data", "Understanding the output", "Using onlineFDR Exploratively", "Using onlineFDR over time", "More Advanced Use Cases", "Batch Setting", "Setting a Bound", "API", "Online FDR Control", "Batch FDR Control", "Asynchronous FDR Control", "FWER Control", "How to get help for onlineFDR", "Acknowledgements", "References" ], "created": "2020-10-30 15:22:26", "modified": "2022-08-25 16:33:53", "commits": 17 } ], "_score": 7.237543738142874, "_indexed": true, "_nocasepkg": "onlinefdr", "_universes": [ "bioc", "dsrobertson" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.21.0", "date": "2026-05-10T09:37:37.000Z", "distro": "noble", "arch": "aarch64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "9f8f458c88f391e4931f50d7e07f00a8b5c3787b8189f302e2da28c19cc58edb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.7.0", "os": "linux", "version": "2.21.0", "date": "2026-05-10T09:38:27.000Z", "distro": "noble", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "00e74adfba2f32e343de81a8559e77ae126df8619ce0dc91216ae1d8b4b2c2f2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.6.0", "os": "linux", "version": "2.21.0", "date": "2026-05-10T09:38:02.000Z", "distro": "noble", "arch": "aarch64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "5e63a2a9030b6fbb638ba562df6c3cd9bbf0bb605347ab7f59c34c73415cc4d1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.6.0", "os": "linux", "version": "2.21.0", "date": "2026-05-10T09:38:37.000Z", "distro": "noble", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "00d9e1d774dd0b92295e5e2bb546ebfd23d80d63f2a2ef3a7840645d789b9aba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.5.3", "os": "mac", "version": "2.21.0", "date": "2026-05-10T09:55:53.000Z", "arch": "aarch64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "63fe0f5b0b0a6424e65daed8cfad70abeef7c473bcdd9661b4a8e17b2c3f4b81", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.5.3", "os": "mac", "version": "2.21.0", "date": "2026-05-10T09:40:53.000Z", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "ea2d58de7f3fb41ad36836b15008c74872aaeef0bbdaf9beeeb2ad2106c56efe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.6.0", "os": "mac", "version": "2.21.0", "date": "2026-05-10T09:55:21.000Z", "arch": "aarch64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "1d88a57a1fb251b791024797f3b2360e75ff096c75ca0f0a3a98ef27b927fcb5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.6.0", "os": "mac", "version": "2.21.0", "date": "2026-05-10T09:42:09.000Z", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "5c3ade190d6813260bed139837adeedb41fb34b992f620880c2d19f7519c1a34", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.7.0", "os": "win", "version": "2.21.0", "date": "2026-05-10T09:36:44.000Z", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "7f18d9284f90be23ff185e99f27f8829263401ebc4c0a25561a63d8fe4d0ed97", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.5.3", "os": "win", "version": "2.21.0", "date": "2026-05-10T09:36:40.000Z", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "4da72fa7bf2bab3924f383ede07f9e8f4d89995a4757e80e31dd930b3e5c7b73", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.6.0", "os": "win", "version": "2.21.0", "date": "2026-05-10T09:36:48.000Z", "arch": "x86_64", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "706567cf0fe45dcc9966364e31cbd966a9d696dd1cc89d0e7f5f5abd4d4c8305", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" }, { "r": "4.6.0", "os": "wasm", "version": "2.21.0", "date": "2026-05-22T12:07:17.000Z", "arch": "emscripten", "commit": "74a4cbc8707713825defb7c9e2fa11b256c2c11d", "fileid": "8caa6d924094fea822a19d1ec26763256abd8c7308be806955e9a60fab56de86", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/25625261140" } ] }