{
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  "Version": "1.77.0",
  "Title": "Preprocessing tools for oligonucleotide arrays",
  "Author": "Benilton Carvalho and Rafael Irizarry",
  "Contributors": "Ben Bolstad, Vincent Carey, Wolfgang Huber, Harris\nJaffee, Jim MacDonald, Matt Settles, Guido Hooiveld",
  "Maintainer": "Benilton Carvalho <benilton@unicamp.br>",
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  "Description": "A package to analyze oligonucleotide arrays\n(expression/SNP/tiling/exon) at probe-level. It currently\nsupports Affymetrix (CEL files) and NimbleGen arrays (XYS\nfiles).",
  "License": "LGPL (>= 2)",
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  "biocViews": "Microarray, OneChannel, TwoChannel, Preprocessing, SNP,\nDifferentialExpression, ExonArray, GeneExpression, DataImport",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:31:14 UTC",
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      "title": "The oligo package: a tool for low-level analysis of oligonucleotide arrays",
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        "getContainer,TilingFeatureSet-method",
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        "bgSequence,DBPDInfo-method",
        "bgSequence,ExonFeatureSet-method",
        "bgSequence,FeatureSet-method",
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      "page": "oligoDefunct",
      "title": "Defunct Functions in Package 'oligo'",
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        "oligo-defunct",
        "resids"
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      "title": "Class '\"oligoPLM\"'",
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        "boxplot,oligoPLM-method",
        "coef,oligoPLM-method",
        "coefs.probe",
        "coefs.probe,oligoPLM-method",
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      "page": "plotM-methods",
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      "page": "read.celfiles",
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      "page": "readSummaries",
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      "topics": [
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    },
    {
      "page": "rma-methods",
      "title": "RMA - Robust Multichip Average algorithm",
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    },
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      "page": "sequenceDesignMatrix",
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    },
    {
      "page": "snprma",
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      "created": "2015-04-07 03:48:26",
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