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  "Title": "An R toolkit for non-coding RNA",
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  "Date": "2021-06-27",
  "Authors@R": "c(\nperson(\"Lara\", \"Selles Vidal\", email = \"lara.selles@oist.jp\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0003-2537-6824\")),\nperson(\"Rafael\", \"Ayala\", email = \"rafael.ayala@oist.jp\", role = \"aut\", comment = c(ORCID = \"0000-0002-9332-4623\")),\nperson(\"Guy-Bart\", \"Stan\", email = \"g.stan@imperial.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0002-5560-902X\")),\nperson(\"Rodrigo\", \"Ledesma-Amaro\", email = \"r.ledesma-amaro@imperial.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0003-2631-5898\")))",
  "Description": "ncRNAtools provides a set of basic tools for handling and\nanalyzing non-coding RNAs. These include tools to access the\nRNAcentral database and to predict and visualize the secondary\nstructure of non-coding RNAs. The package also provides tools\nto read, write and interconvert the file formats most commonly\nused for representing such secondary structures.",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-30 02:16:32 UTC",
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    "plotCompositePairsMatrix",
    "plotPairsProbabilityMatrix",
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    "rnaCentralTextSearch",
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    {
      "page": "findPairedBases",
      "title": "Determines paired bases from secondary structure string",
      "topics": [
        "findPairedBases"
      ]
    },
    {
      "page": "flattenDotBracket",
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      "topics": [
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      ]
    },
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        "generatePairsProbabilityMatrix"
      ]
    },
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    },
    {
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      "title": "Plots a composite matrix of base pair probabilities and paired bases",
      "topics": [
        "plotCompositePairsMatrix"
      ]
    },
    {
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      "title": "Plots a matrix of base pair probabilities",
      "topics": [
        "plotPairsProbabilityMatrix"
      ]
    },
    {
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      "topics": [
        "predictAlternativeSecondaryStructures"
      ]
    },
    {
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      ]
    },
    {
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      "topics": [
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    },
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      ]
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      ]
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