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  "Title": "parser for netCDF, mzXML and mzML and mzIdentML files (mass\nspectrometry data)",
  "Version": "2.47.2",
  "Author": "Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou,\nJohannes Rainer",
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  "Description": "mzR provides a unified API to the common file formats and\nparsers available for mass spectrometry data. It comes with a\nsubset of the proteowizard library for mzXML, mzML and\nmzIdentML. The netCDF reading code has previously been used in\nXCMS.",
  "License": "Artistic-2.0",
  "LazyLoad": "yes",
  "VignetteBuilder": "knitr",
  "RcppModules": "Pwiz, Ident",
  "SystemRequirements": "C++11, GNU make",
  "URL": "https://github.com/sneumann/mzR/",
  "BugReports": "https://github.com/sneumann/mzR/issues/",
  "biocViews": "ImmunoOncology, Infrastructure, DataImport, Proteomics,\nMetabolomics, MassSpectrometry",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "make libnetcdf-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-11-02 16:18:09 UTC",
  "RemoteUrl": "https://github.com/bioc/mzR",
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  "Maintainer": "Steffen Neumann <sneumann@ipb-halle.de>",
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  "_expires": "2027-02-11T12:32:37.000Z",
  "_created": "2026-11-03T10:01:27.000Z",
  "_published": "2026-11-03T12:32:39.987Z",
  "_upstream": "https://github.com/bioc/mzR",
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    "runInfo",
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    {
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      "title": "Returns the ion selection isolation window",
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        "isolationWindow,character-method",
        "isolationWindow,mzRpwiz-method",
        "isolationWindow-methods"
      ]
    },
    {
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      "title": "Access the metadata from an 'mzR' object.",
      "topics": [
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        "chromatogramsInfo",
        "database",
        "detector",
        "enzymes",
        "instrumentInfo",
        "ionisation",
        "manufacturer",
        "model",
        "modifications",
        "mzidInfo",
        "para",
        "psms",
        "runInfo",
        "sampleInfo",
        "score",
        "softwareInfo",
        "sourceInfo",
        "specParams",
        "substitutions",
        "tolerance"
      ]
    },
    {
      "page": "mzR-class",
      "title": "Class 'mzR' and sub-classes",
      "topics": [
        "analyzer,mzRnetCDF-method",
        "analyzer,mzRpwiz-method",
        "chromatogramsInfo,mzRpwiz-method",
        "class:mzR",
        "class:mzRident",
        "class:mzRnetCDF",
        "class:mzRpwiz",
        "close",
        "close,mzRnetCDF-method",
        "close,mzRpwiz-method",
        "database,mzRident-method",
        "detector,mzRnetCDF-method",
        "detector,mzRpwiz-method",
        "enzymes,mzRident-method",
        "fileName,mzR-method",
        "instrumentInfo,mzRnetCDF-method",
        "instrumentInfo,mzRpwiz-method",
        "ionisation,mzRnetCDF-method",
        "ionisation,mzRpwiz-method",
        "isInitialized,mzRnetCDF-method",
        "length",
        "length,mzRident-method",
        "length,mzRnetCDF-method",
        "length,mzRpwiz-method",
        "manufacturer,mzRnetCDF-method",
        "manufacturer,mzRpwiz-method",
        "model,mzRnetCDF-method",
        "model,mzRpwiz-method",
        "modifications,mzRident-method",
        "mzidInfo,mzRident-method",
        "mzR-class",
        "mzRident-class",
        "mzRnetCDF-class",
        "mzRpwiz-class",
        "para,mzRident-method",
        "psms,mzRident-method",
        "runInfo,mzRnetCDF-method",
        "runInfo,mzRpwiz-method",
        "sampleInfo,mzRpwiz-method",
        "score,mzRident-method",
        "softwareInfo,mzRident-method",
        "softwareInfo,mzRpwiz-method",
        "sourceInfo,mzRident-method",
        "sourceInfo,mzRpwiz-method",
        "specParams,mzRident-method",
        "substitutions,mzRident-method",
        "tolerance,mzRident-method"
      ]
    },
    {
      "page": "openMSfile",
      "title": "Create and check mzR objects from netCDF, mzXML or mzML files.",
      "topics": [
        "fileName",
        "isInitialized",
        "openIDfile",
        "openMSfile"
      ]
    },
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      "page": "peaks",
      "title": "Access the raw data from an 'mzR' object.",
      "topics": [
        "chromatogram",
        "chromatogram,mzRnetCDF-method",
        "chromatogram,mzRpwiz-method",
        "chromatogramHeader",
        "chromatogramHeader,mzRnetCDF-method",
        "chromatogramHeader,mzRpwiz-method",
        "chromatograms",
        "chromatograms,mzRnetCDF-method",
        "chromatograms,mzRpwiz-method",
        "get3Dmap",
        "get3Dmap,mzRpwiz-method",
        "header",
        "header,mzRnetCDF,missing-method",
        "header,mzRnetCDF,numeric-method",
        "header,mzRpwiz,missing-method",
        "header,mzRpwiz,numeric-method",
        "nChrom",
        "peaks",
        "peaks,mzRnetCDF-method",
        "peaks,mzRpwiz-method",
        "peaksCount",
        "peaksCount,mzRpwiz,missing-method",
        "peaksCount,mzRpwiz,numeric-method",
        "spectra",
        "spectra,mzRnetCDF-method",
        "spectra,mzRpwiz-method",
        "tic",
        "tic,mzRpwiz-method"
      ]
    },
    {
      "page": "pwiz-version",
      "title": "Get the version number of pwiz backend.",
      "topics": [
        "pwiz.version"
      ]
    },
    {
      "page": "writeMSData",
      "title": "Write MS spectrum data to an MS file",
      "topics": [
        "writeMSData",
        "writeMSData,list,character-method"
      ]
    }
  ],
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      "homepage": "http://gcc.gnu.org/",
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  "_nocasepkg": "mzr",
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}