{
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  "Package": "mzID",
  "Type": "Package",
  "Title": "An mzIdentML parser for R",
  "Version": "1.51.0",
  "Authors@R": "c(person(given = \"Laurent\", family = \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-1520-2268\"),\nrole = c(\"ctb\", \"cre\")),\nperson(given = \"Thomas\", family = \"Pedersen\",\nemail = \"thomasp85@gmail.com\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Vladislav\", family = \"Petyuk\",\nrole = c(\"ctb\")))",
  "Description": "A parser for mzIdentML files implemented using the XML\npackage. The parser tries to be general and able to handle all\ntypes of mzIdentML files with the drawback of having less\n'pretty' output than a vendor specific parser. Please contact\nthe maintainer with any problems and supply an mzIdentML file\nso the problems can be fixed quickly.",
  "License": "GPL (>= 2)",
  "LazyLoad": "yes",
  "biocViews": "ImmunoOncology, DataImport, MassSpectrometry, Proteomics",
  "VignetteBuilder": "knitr",
  "Collate": "'aaa.R' 'generics.R' 'mzIDpsm.R' 'mzIDpeptides.R'\n'mzIDparameters.R' 'mzIDevidence.R' 'mzIDdatabase.R' 'mzID.R'\n'mzIDCollection.R' 'mzID-constructor.R' 'mzID-package.R'",
  "RoxygenNote": "5.0.1",
  "Config/pak/sysreqs": "libxml2-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:38:09 UTC",
  "RemoteUrl": "https://github.com/bioc/mzID",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 12:52:08 UTC",
    "User": "root"
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  "Author": "Laurent Gatto [ctb, cre] (ORCID:\n<https://orcid.org/0000-0002-1520-2268>),\nThomas Pedersen [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>),\nVladislav Petyuk [ctb]",
  "Maintainer": "Laurent Gatto <laurent.gatto@uclouvain.be>",
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  "_expires": "2027-02-09T13:00:36.000Z",
  "_created": "2026-11-01T12:52:08.000Z",
  "_published": "2026-11-01T13:00:38.859Z",
  "_upstream": "https://github.com/bioc/mzID",
  "_status": "success",
  "_maintainer": {
    "name": "Laurent Gatto",
    "email": "laurent.gatto@uclouvain.be",
    "login": "lgatto",
    "mastodon": "@lgatto@fediscience.org",
    "orcid": "0000-0002-1520-2268",
    "description": "Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.\n",
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    "type": "organization",
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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  "_searchresults": 47,
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        "hash": "9df5075e0ba80f17"
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/mzID.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
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  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
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    "files",
    "flatten",
    "id",
    "idScanMap",
    "mzID",
    "mzIDCollection",
    "mzIDdatabase",
    "mzIDevidence",
    "mzIDparameters",
    "mzIDpeptides",
    "mzIDpsm",
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    "removeDecoy",
    "software"
  ],
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    {
      "page": "mzID-package",
      "title": "A parser for the mzIdentML file format",
      "topics": [
        "mzID-package"
      ]
    },
    {
      "page": "flatten",
      "title": "Flatten an mzID related class into a table",
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        "flatten",
        "flatten,mzID-method",
        "flatten,mzIDCollection-method",
        "flatten,mzIDpeptides-method",
        "flatten,mzIDpsm-method"
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    {
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      "title": "Parse an mzIdentML file",
      "topics": [
        "mzID"
      ]
    },
    {
      "page": "mzID-class",
      "title": "A class to contain data from mzIdentML-files",
      "topics": [
        "c,mzID-method",
        "database,mzID-method",
        "evidence,mzID-method",
        "files,mzID-method",
        "id,mzID-method",
        "idScanMap,mzID-method",
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        "modifications,mzID-method",
        "mzID-class",
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        "peptides,mzID-method",
        "removeDecoy,mzID-method",
        "scans,mzID-method",
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    },
    {
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      "title": "Getter functions for identification data",
      "topics": [
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        "files",
        "id",
        "idScanMap",
        "mzID-getters",
        "parameters",
        "software"
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    {
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      "title": "Create a new mzIDCollection",
      "topics": [
        "mzIDCollection"
      ]
    },
    {
      "page": "mzIDCollection-class",
      "title": "A class to handle a set of mzID objects",
      "topics": [
        "as.list.mzIDCollection",
        "c,mzIDCollection-method",
        "database,mzIDCollection-method",
        "evidence,mzIDCollection-method",
        "files,mzIDCollection-method",
        "id,mzIDCollection-method",
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        "peptides,mzIDCollection-method",
        "removeDecoy,mzIDCollection-method",
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        "software,mzIDCollection-method",
        "[,mzIDCollection,character,missing,missing-method",
        "[,mzIDCollection,logical,missing,missing-method",
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        "length,mzIDdatabase-method",
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      "page": "removeDecoy",
      "title": "Remove decoy identification",
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