{
  "_id": "6a1af4261d7bb097a09f8b71",
  "Package": "multicrispr",
  "Title": "Multi-locus multi-purpose Crispr/Cas design",
  "Version": "1.23.0",
  "Encoding": "UTF-8",
  "Authors@R": "c(person(\"Aditya\",   \"Bhagwat\",    NULL, \"aditya.bhagwat@uni-marburg.de\",   c(\"aut\", \"cre\")),\nperson( \"Richie\",   \"´Cotton\",    NULL, \"richierocks@gmail.com\",            \"aut\"),\nperson( \"Rene\",     \"Wiegandt\",   NULL, \"rene.wiegandt@mpi-bn.mpg.de\",      \"ctb\"),\nperson( \"Mette\",    \"Bentsen\",    NULL, \"mette.bentsen@mpi-bn.mpg.de\",      \"ctb\"),\nperson( \"Jens\",     \"Preussner\",  NULL, \"jens.preussner@mpi-bn.mpg.de\",     \"ctb\"),\nperson( \"Michael\",  \"Lawrence\",   NULL, \"lawrence.michael@gene.com\",        \"ctb\"),\nperson( \"Hervé\",    \"Pagès\",      NULL, \"hpages.on.github@gmail.com\",       \"ctb\"),\nperson( \"Johannes\", \"Graumann\",   NULL, 'johannes.graumann@uni-marburg.de', \"sad\"),\nperson( \"Mario\",    \"Looso\",      NULL, \"mario.looso@mpi-bn.mpg.de\",        c(\"sad\",\"rth\")))",
  "Description": "This package is for designing Crispr/Cas9 and Prime\nEditing experiments. It contains functions to (1) define and\ntransform genomic targets, (2) find spacers (4) count offtarget\n(mis)matches, and (5) compute Doench2016/2014 targeting\nefficiency. Care has been taken for multicrispr to scale well\ntowards large target sets, enabling the design of large\nCrispr/Cas9 libraries.",
  "License": "GPL-2",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "biocViews": "CRISPR, Software",
  "BugReports": "https://github.com/bhagwataditya/multicrispr/issues",
  "URL": "https://github.com/bhagwataditya/multicrispr",
  "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev python3 libx11-dev\nxz-utils zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:52:55 UTC",
  "RemoteUrl": "https://github.com/bioc/multicrispr",
  "RemoteRef": "HEAD",
  "RemoteSha": "aabd0f0ef3227f26fb58496d6f18c7f8480b0cf4",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 09:44:37 UTC",
    "User": "root"
  },
  "Author": "Aditya Bhagwat [aut, cre],\nRichie ´Cotton [aut],\nRene Wiegandt [ctb],\nMette Bentsen [ctb],\nJens Preussner [ctb],\nMichael Lawrence [ctb],\nHervé Pagès [ctb],\nJohannes Graumann [sad],\nMario Looso [sad, rth]",
  "Maintainer": "Aditya Bhagwat <aditya.bhagwat@uni-marburg.de>",
  "MD5sum": "5e72d09b3900c67fcb1aa1a928556ef1",
  "_user": "bioc",
  "_type": "src",
  "_file": "multicrispr_1.23.0.tar.gz",
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  "_created": "2026-05-30T09:44:37.000Z",
  "_published": "2026-05-30T14:28:54.483Z",
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    "add_inverse_strand",
    "add_seq",
    "add_target_matches",
    "bed_to_granges",
    "char_to_granges",
    "double_flank",
    "down_flank",
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    "extend",
    "extend_for_pe",
    "extend_pe_to_gg",
    "extract_matchranges",
    "extract_subranges",
    "find_gg",
    "find_primespacers",
    "find_spacers",
    "genefile_to_granges",
    "genes_to_granges",
    "gr2dt",
    "has_been_indexed",
    "index_genome",
    "index_targets",
    "plot_intervals",
    "plot_karyogram",
    "read_ranges",
    "score_ontargets",
    "up_flank",
    "write_ranges"
  ],
  "_help": [
    {
      "page": "add_genome_matches",
      "title": "Add genome matches",
      "topics": [
        "add_genome_matches"
      ]
    },
    {
      "page": "add_inverse_strand",
      "title": "Add inverse strand",
      "topics": [
        "add_inverse_strand"
      ]
    },
    {
      "page": "add_seq",
      "title": "Add sequence to GRanges",
      "topics": [
        "add_seq"
      ]
    },
    {
      "page": "add_target_matches",
      "title": "Add target matches",
      "topics": [
        "add_target_matches"
      ]
    },
    {
      "page": "bed_to_granges",
      "title": "Read bedfile into GRanges",
      "topics": [
        "bed_to_granges"
      ]
    },
    {
      "page": "char_to_granges",
      "title": "Convert character vector into GRanges",
      "topics": [
        "char_to_granges"
      ]
    },
    {
      "page": "double_flank",
      "title": "Double flank",
      "topics": [
        "double_flank"
      ]
    },
    {
      "page": "extend_for_pe",
      "title": "Extend ranges for prime editing",
      "topics": [
        "extend_for_pe"
      ]
    },
    {
      "page": "extend_pe_to_gg",
      "title": "Extend prime editing target to find GG sites",
      "topics": [
        "extend_pe_to_gg"
      ]
    },
    {
      "page": "extract_matchranges",
      "title": "Extract matching subranges",
      "topics": [
        "extract_matchranges"
      ]
    },
    {
      "page": "extract_subranges",
      "title": "Extract subranges",
      "topics": [
        "extract_subranges"
      ]
    },
    {
      "page": "find_gg",
      "title": "Find GG",
      "topics": [
        "find_gg"
      ]
    },
    {
      "page": "find_primespacers",
      "title": "Find prime editing spacers",
      "topics": [
        "find_primespacers"
      ]
    },
    {
      "page": "find_spacers",
      "title": "Find crispr spacers in targetranges",
      "topics": [
        "find_spacers"
      ]
    },
    {
      "page": "genes_to_granges",
      "title": "Convert geneids into GRanges",
      "topics": [
        "genefile_to_granges",
        "genes_to_granges"
      ]
    },
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      "page": "gr2dt",
      "title": "GRanges <-> data.table",
      "topics": [
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        "gr2dt"
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      "title": "Has been indexed?",
      "topics": [
        "has_been_indexed"
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      "page": "plot_intervals",
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        "extend",
        "up_flank"
      ]
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