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  "Date": "2025-07-24",
  "Author": "Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles",
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  "Description": "This package provides functions for fitting MOSAiCS and\nMOSAiCS-HMM, a statistical framework to analyze one-sample or\ntwo-sample ChIP-seq data of transcription factor binding and\nhistone modification.",
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  "URL": "http://groups.google.com/group/mosaics_user_group",
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      "title": "MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)",
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        "mosaics"
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        "adjustBoundary,MosaicsPeak-method"
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        "tagCount,BinData-method"
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    },
    {
      "page": "constructBins",
      "title": "Construct bin-level ChIP-sep data from an aligned read file",
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        "constructBins"
      ]
    },
    {
      "page": "estimates",
      "title": "Extract estimates of the fitted MOSAiCS model",
      "topics": [
        "estimates",
        "estimates,MosaicsFit-method"
      ]
    },
    {
      "page": "export",
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      "topics": [
        "export",
        "export,MosaicsPeak-method"
      ]
    },
    {
      "page": "extractReads",
      "title": "Load read-level data and extract reads corresponding to each peak region",
      "topics": [
        "extractReads",
        "extractReads,MosaicsPeak-method"
      ]
    },
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      "page": "fllterPeak",
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        "filterPeak,MosaicsPeak-method"
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    {
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        "findSummit,MosaicsPeak-method"
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    },
    {
      "page": "mosaicsFit",
      "title": "Fit MOSAiCS model",
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        "mosaicsFit,BinData-method"
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        "MosaicsHMM-class",
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        "seqDepth,MosaicsHMM-method",
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      "page": "mosaicsPeak",
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        "mosaicsPeak,MosaicsFit-method"
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