{
  "_id": "6ae76ace818c9e3ef6dbc187",
  "Package": "missRows",
  "Type": "Package",
  "Title": "Handling Missing Individuals in Multi-Omics Data Integration",
  "Version": "1.33.0",
  "Date": "2022-01-14",
  "Author": "Ignacio Gonzalez and Valentin Voillet",
  "Maintainer": "Gonzalez Ignacio <ignacio.gonzalez@bbox.fr>",
  "Description": "The missRows package implements the MI-MFA method to deal\nwith missing individuals ('biological units') in multi-omics\ndata integration. The MI-MFA method generates multiple imputed\ndatasets from a Multiple Factor Analysis model, then the yield\nresults are combined in a single consensus solution. The\npackage provides functions for estimating coordinates of\nindividuals and variables, imputing missing individuals, and\nvarious diagnostic plots to inspect the pattern of missingness\nand visualize the uncertainty due to missing values.",
  "License": "Artistic-2.0",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, StatisticalMethod, DimensionReduction,\nPrincipalComponent, MathematicalBiology, Visualization",
  "RoxygenNote": "6.0.1",
  "Config/pak/sysreqs": "libicu-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:47:42 UTC",
  "RemoteUrl": "https://github.com/bioc/missRows",
  "RemoteRef": "HEAD",
  "RemoteSha": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 14:00:51 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "missRows_1.33.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/22a43df00c20021ea31b8636048229196de71d47118be8e85d692b4e57833451",
  "_filesize": 824035,
  "_sha256": "22a43df00c20021ea31b8636048229196de71d47118be8e85d692b4e57833451",
  "_expires": "2027-02-09T16:37:32.000Z",
  "_created": "2026-11-01T14:00:51.000Z",
  "_published": "2026-11-01T16:37:34.281Z",
  "_upstream": "https://github.com/bioc/missRows",
  "_status": "success",
  "_maintainer": {
    "name": "Gonzalez Ignacio",
    "email": "ignacio.gonzalez@bbox.fr",
    "login": "gonzalezignacio",
    "description": "",
    "uuid": 35460245
  },
  "_jobs": [
    {
      "job": 124870365545,
      "time": 182,
      "config": "bioc-checks",
      "r": "4.6.2",
      "check": "ERROR",
      "artifact": "13087671695"
    },
    {
      "job": 124870365565,
      "time": 351,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "13086874182"
    },
    {
      "job": 124870365464,
      "time": 326,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13086948791"
    },
    {
      "job": 124870365693,
      "time": 188,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "13091194428"
    },
    {
      "job": 124870365750,
      "time": 222,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13091448581"
    },
    {
      "job": 124861931762,
      "time": 295,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13086800218"
    },
    {
      "job": 124870365476,
      "time": 115,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13087516035"
    },
    {
      "job": 124870365537,
      "time": 216,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "13086583593"
    },
    {
      "job": 124870365495,
      "time": 216,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "13086309733"
    },
    {
      "job": 124870365501,
      "time": 226,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13086339696"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 7
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598",
  "_commit": {
    "id": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380462
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Depends"
    },
    {
      "package": "grDevices",
      "role": "Depends"
    },
    {
      "package": "MultiAssayExperiment",
      "role": "Depends"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "gtools",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.33.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.32.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "software",
    "statisticalmethod",
    "dimensionreduction",
    "principalcomponent",
    "mathematicalbiology",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 482,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 526,
    "source": "https://www.bioconductor.org/packages/stats/bioc/missRows"
  },
  "_searchresults": 5,
  "_abi": {
    "exports": [
      {
        "key": "missRows::MIDTList",
        "hash": "55b577ae0874682f"
      },
      {
        "key": "missRows::generic:MIparam",
        "hash": "bab05cf9cfa3a763"
      },
      {
        "key": "missRows::generic:compromise",
        "hash": "6916340ef1cb0c1e"
      },
      {
        "key": "missRows::generic:configurations",
        "hash": "d565ed8d6a82fa2b"
      },
      {
        "key": "missRows::generic:imputedIndv",
        "hash": "caff3c6156f75485"
      },
      {
        "key": "missRows::generic:missingIndv",
        "hash": "a0d19b66df1d98fc"
      },
      {
        "key": "missRows::generic:strata",
        "hash": "868ac98d7a814660"
      }
    ],
    "imports": [
      {
        "key": "MultiAssayExperiment::MultiAssayExperiment",
        "hash": "9784902179b4174c"
      },
      {
        "key": "S4Vectors::Annotated",
        "hash": "9b5b8ee6ad9969f8"
      }
    ]
  },
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/missRows.html",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "compromise",
    "configurations",
    "imputedData",
    "imputedIndv",
    "MIDTList",
    "MIMFA",
    "MIparam",
    "missingIndv",
    "missPattern",
    "plotInd",
    "plotVar",
    "tuneM"
  ],
  "_datasets": [
    {
      "name": "NCI60",
      "title": "Data of the NCI-60 Cell Lines with Missing Individuals",
      "object": "NCI60",
      "file": "NCI60.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "missRows-package",
      "title": "Handling Missing Individuals in Multi-Omics Data Integration",
      "topics": [
        "missRows-package",
        "missRows"
      ]
    },
    {
      "page": "eigenvalue",
      "title": "Scaled Firts Singular Value of the SVD of a Matrix",
      "topics": [
        "eigenvalue"
      ]
    },
    {
      "page": "estimNC",
      "title": "Estimate the Number of Components for Data Imputation",
      "topics": [
        "estimNC"
      ]
    },
    {
      "page": "imputeDataMFA",
      "title": "Impute Missing Rows and Estimates MFA Axes",
      "topics": [
        "imputeDataMFA"
      ]
    },
    {
      "page": "imputedData",
      "title": "Get the Imputed Data Tables",
      "topics": [
        "imputedData"
      ]
    },
    {
      "page": "MFA",
      "title": "Multiple Factor Analysis (MFA)",
      "topics": [
        "MFA"
      ]
    },
    {
      "page": "MIDTList",
      "title": "Infrastructure for Multiple Imputation and Multi-omics Experiments",
      "topics": [
        "compromise",
        "compromise,MIDTList-method",
        "configurations",
        "configurations,MIDTList-method",
        "imputedIndv",
        "imputedIndv,MIDTList-method",
        "initialize,MIDTList-method",
        "MIDTList",
        "MIDTList-class",
        "MIparam",
        "MIparam,MIDTList-method",
        "missingIndv",
        "missingIndv,MIDTList-method",
        "strata",
        "strata,MIDTList-method"
      ]
    },
    {
      "page": "MIMFA",
      "title": "Handling Missing Individuals in MFA",
      "topics": [
        "MIMFA"
      ]
    },
    {
      "page": "missPattern",
      "title": "Inspects Pattern of Missingness",
      "topics": [
        "missPattern",
        "print.missPattern"
      ]
    },
    {
      "page": "NCI60",
      "title": "Data of the NCI-60 Cell Lines with Missing Individuals",
      "topics": [
        "NCI60"
      ]
    },
    {
      "page": "plotInd",
      "title": "Plot of Individuals (Experimental Units)",
      "topics": [
        "plotInd"
      ]
    },
    {
      "page": "plotVar",
      "title": "Plot of Variables: Correlation Circle",
      "topics": [
        "plotVar"
      ]
    },
    {
      "page": "RVcoeff",
      "title": "Calculate the RV Coefficient",
      "topics": [
        "RVcoeff"
      ]
    },
    {
      "page": "searchsComb",
      "title": "Search the Element of a Combination",
      "topics": [
        "searchsComb"
      ]
    },
    {
      "page": "STATIS",
      "title": "STATIS Analysis of Multiple Data Tables",
      "topics": [
        "STATIS"
      ]
    },
    {
      "page": "tuneM",
      "title": "Tune the Number of Imputations in MI-MFA",
      "topics": [
        "print.tuneM",
        "tuneM"
      ]
    },
    {
      "page": "wrapperSVD",
      "title": "Singular Value Decomposition of a Matrix",
      "topics": [
        "wrapperSVD"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "cli",
    "cpp11",
    "DelayedArray",
    "dplyr",
    "farver",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "gtable",
    "gtools",
    "IRanges",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "MultiAssayExperiment",
    "pillar",
    "pkgconfig",
    "plyr",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "missRows.Rnw",
      "filename": "missRows.pdf",
      "title": "missRows",
      "engine": "knitr::knitr",
      "headings": [
        "1 Introduction",
        "2 Using missRows",
        "3 Methods behind missRows",
        "4 Session information"
      ],
      "created": "2018-02-23 10:27:05",
      "modified": "2018-08-30 17:52:29",
      "commits": 18
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "missrows",
  "_universes": [
    "bioc",
    "gonzalezignacio"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.33.0",
      "date": "2026-11-01T14:25:40.000Z",
      "distro": "resolute",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/f08a0850f02bc2a5d3a7fdb95f783245acc778f9a872145860027ea1133e7da0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.33.0",
      "date": "2026-11-01T14:25:38.000Z",
      "distro": "resolute",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/af023613720d0040f7bffbee87a4090b1e90ec75842bc5c35adaec8047535a37",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.33.0",
      "date": "2026-11-01T16:34:41.000Z",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/55852d1d131072b79b0987df7e206d93104702de4962a98cf62035b1fa900314",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.33.0",
      "date": "2026-11-01T16:35:05.000Z",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/18913ad52f36220b60d15454f2a198f55a5d26287bcbd11857ef6f8727569000",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.33.0",
      "date": "2026-11-01T14:24:16.000Z",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/1f0e41004eee206a2e9f90d476fc0039183d6d4becfd18aa9a64db8ceb636fd7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.33.0",
      "date": "2026-11-01T14:02:43.000Z",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/2df895f76644960b498d0aa0fd72ff480035abd5577c4d37cc15044eb4c90a96",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.33.0",
      "date": "2026-11-01T14:02:41.000Z",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/10e73afec0d8e19d99b6c115a1792d39d211b739cc0b29d0b806efd5b845d683",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.33.0",
      "date": "2026-11-01T14:02:47.000Z",
      "commit": "5c5fd6c8940523bcf1511fafe9e7896a5b8a0a1e",
      "fileid": "https://r2.ropensci.org/6e583db1c0af4040a2f580850c80f25af354624cdb0fd5e5e2520d4bc7bf8085",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41310216598"
    }
  ]
}