{
  "_id": "6a5b087e9baadeef8ab4a667",
  "Package": "miRNAtap",
  "Type": "Package",
  "Title": "miRNAtap: microRNA Targets - Aggregated Predictions",
  "Version": "1.47.0",
  "Date": "2016-10-03",
  "Author": "Maciej Pajak, T. Ian Simpson",
  "Maintainer": "T. Ian Simpson <ian.simpson@ed.ac.uk>",
  "Description": "The package facilitates implementation of workflows\nrequiring miRNA predictions, it allows to integrate ranked\nmiRNA target predictions from multiple sources available online\nand aggregate them with various methods which improves quality\nof predictions above any of the single sources. Currently\npredictions are available for Homo sapiens, Mus musculus and\nRattus norvegicus (the last one through homology translation).",
  "License": "GPL-2",
  "biocViews": "Software, Classification, Microarray, Sequencing, miRNA",
  "Roxygen": "list(wrap = FALSE)",
  "RoxygenNote": "5.0.1",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:39:31 UTC",
  "RemoteUrl": "https://github.com/bioc/miRNAtap",
  "RemoteRef": "HEAD",
  "RemoteSha": "53459dc51ed9f88ce41792c26734b0dac5264678",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-18 04:54:09 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "miRNAtap_1.47.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/97e861d1ead9ae32de16c0ce64016c26eaa639bc40a4dabb10821a471816e5be",
  "_filesize": 201977,
  "_sha256": "97e861d1ead9ae32de16c0ce64016c26eaa639bc40a4dabb10821a471816e5be",
  "_expires": "2026-10-26T05:00:44.000Z",
  "_created": "2026-07-18T04:54:09.000Z",
  "_published": "2026-07-18T05:00:46.258Z",
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 11
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216",
  "_status": "success",
  "_upstream": "https://github.com/bioc/miRNAtap",
  "_commit": {
    "id": "53459dc51ed9f88ce41792c26734b0dac5264678",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379971
  },
  "_maintainer": {
    "name": "T. Ian Simpson",
    "email": "ian.simpson@ed.ac.uk",
    "login": "tisimpson",
    "twitter": "@tisimpson",
    "description": "",
    "uuid": 1275313
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 88045385699,
      "time": 216,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8425590253"
    },
    {
      "job": 88045385702,
      "time": 321,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8425608271"
    },
    {
      "job": 88045385732,
      "time": 291,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8425603477"
    },
    {
      "job": 88045385701,
      "time": 162,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8425589052"
    },
    {
      "job": 88045385705,
      "time": 143,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8425585308"
    },
    {
      "job": 88044974103,
      "time": 294,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8425555623"
    },
    {
      "job": 88045385706,
      "time": 183,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8425584638"
    },
    {
      "job": 88045385724,
      "time": 182,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8425584972"
    },
    {
      "job": 88045385721,
      "time": 181,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8425585277"
    },
    {
      "job": 88045385748,
      "time": 189,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8425586316"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "AnnotationDbi",
      "role": "Depends"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "RSQLite",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "sqldf",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "topGO",
      "role": "Suggests"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Suggests"
    },
    {
      "package": "miRNAtap.db",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "classification",
    "microarray",
    "sequencing",
    "mirna"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 447,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 489,
    "source": "https://www.bioconductor.org/packages/stats/bioc/miRNAtap"
  },
  "_mentions": 12,
  "_searchresults": 59,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/miRNAtap.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "aggregateRanks",
    "columns",
    "getPredictedTargets",
    "getTargetsFromSource",
    "keys",
    "keytypes",
    "select",
    "translate"
  ],
  "_help": [
    {
      "page": "aggregateRanks",
      "title": "Aggreagate ranks from multiple sources with various methods",
      "topics": [
        "aggregateRanks"
      ]
    },
    {
      "page": "getPredictedTargets",
      "title": "Get aggregated ordered list of predicted targets for miRNA",
      "topics": [
        "getPredictedTargets"
      ]
    },
    {
      "page": "getTargetsFromSource",
      "title": "Get target list from a single source",
      "topics": [
        "getTargetsFromSource"
      ]
    },
    {
      "page": "MirnaDb-class",
      "title": "Database class",
      "topics": [
        ".MirnaDb",
        "columns",
        "columns,MirnaDb-method",
        "keys",
        "keys,MirnaDb-method",
        "keytypes",
        "keytypes,MirnaDb-method",
        "MirnaDb",
        "MirnaDb-class",
        "select",
        "select,MirnaDb-method"
      ]
    },
    {
      "page": "miRNAtap",
      "title": "miRNAtap: microRNA Targets - Aggregated Predictions.",
      "topics": [
        "miRNAtap-package",
        "miRNAtap"
      ]
    },
    {
      "page": "translate",
      "title": "Homology transfer for miRNAtap",
      "topics": [
        "translate"
      ]
    }
  ],
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "chron",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "fastmap",
    "generics",
    "glue",
    "gsubfn",
    "httr",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pkgconfig",
    "plyr",
    "png",
    "proto",
    "R6",
    "Rcpp",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "sqldf",
    "stringi",
    "stringr",
    "sys",
    "vctrs",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "miRNAtap.Rnw",
      "filename": "miRNAtap.pdf",
      "title": "miRNAtap",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2014-08-22 20:00:17",
      "modified": "2018-08-30 17:52:25",
      "commits": 6
    }
  ],
  "_score": 5.071882007306126,
  "_indexed": true,
  "_nocasepkg": "mirnatap",
  "_universes": [
    "bioc",
    "tisimpson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-18T04:58:52.000Z",
      "distro": "resolute",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/c37a8211d1eccb524f8d214ee00899f55ce5219c7e68fe59b078dacf03427668",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-07-18T04:58:09.000Z",
      "distro": "resolute",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/1aac1c7ea5f2d8953d23e76c860498dbaf96ed4fd961a1cafbe940ca14ba8892",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-18T04:57:08.000Z",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/7e772ab990091e586d29ad2fdbac339ae176c702f4ca2c0ff37dafbc198193bb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-07-18T04:56:50.000Z",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/9fc3a2b30e8c2312cedd0c0a17bd1e790275b17b0da9335526465491ecfc34e1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-07-18T04:57:32.000Z",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/958450a9f5c1211088089c2322ea223a788e5a13f14262f9bbc6396aa3fcb004",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-18T04:56:17.000Z",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/a7a2cf00e5b21732ab545b589020e7218ded98d9f066cfa434218c43efff623f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-18T04:56:20.000Z",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/c805b6a4d086b62202ad2375d339d5dbbd43723ea0ecf55c2364584d28c68e71",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-07-18T04:56:29.000Z",
      "commit": "53459dc51ed9f88ce41792c26734b0dac5264678",
      "fileid": "https://r2.ropensci.org/6899cd84b6180cbffc6ec3e80b245e2b4e8661779a9431b7ecc7e166a7c80ac7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/29631189216"
    }
  ]
}