{
  "_id": "6a494c05f6c47c44194993c5",
  "Package": "miRNApath",
  "Type": "Package",
  "Title": "miRNApath: Pathway Enrichment for miRNA Expression Data",
  "Version": "1.73.0",
  "Author": "James M. Ward <jmw86069@gmail.com> with contributions from\nYunling Shi, Cindy Richards, John P. Cogswell",
  "Maintainer": "James M. Ward <jmw86069@gmail.com>",
  "Description": "This package provides pathway enrichment techniques for\nmiRNA expression data. Specifically, the set of methods handles\nthe many-to-many relationship between miRNAs and the multiple\ngenes they are predicted to target (and thus affect.)  It also\nhandles the gene-to-pathway relationships separately. Both\nsteps are designed to preserve the additive effects of miRNAs\non genes, many miRNAs affecting one gene, one miRNA affecting\nmultiple genes, or many miRNAs affecting many genes.",
  "License": "LGPL-2.1",
  "biocViews": "Annotation, Pathways, DifferentialExpression,\nNetworkEnrichment, miRNA",
  "LazyLoad": "Yes",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:01 UTC",
  "RemoteUrl": "https://github.com/bioc/miRNApath",
  "RemoteRef": "HEAD",
  "RemoteSha": "dde663a3f52a0d1d3606678645a82085785c0f65",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 19:04:39 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "miRNApath_1.73.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/b3e8e2c4fcee22a250bb8bc864d064b3d2f85c21f0468199314bef7384085808",
  "_filesize": 708152,
  "_sha256": "b3e8e2c4fcee22a250bb8bc864d064b3d2f85c21f0468199314bef7384085808",
  "_expires": "2026-10-12T18:08:03.000Z",
  "_created": "2026-07-03T19:04:39.000Z",
  "_published": "2026-07-04T18:08:05.316Z",
  "_bioccheck": {
    "error": 1,
    "warning": 4,
    "note": 17
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189",
  "_status": "success",
  "_upstream": "https://github.com/bioc/miRNApath",
  "_commit": {
    "id": "dde663a3f52a0d1d3606678645a82085785c0f65",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379581
  },
  "_maintainer": {
    "name": "James M. Ward",
    "email": "jmw86069@gmail.com",
    "login": "jmw86069",
    "orcid": "0000-0002-9510-2848",
    "description": "",
    "uuid": 93830
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85154929054,
      "time": 187,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8073388120"
    },
    {
      "job": 85154928952,
      "time": 192,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8073388962"
    },
    {
      "job": 85154929150,
      "time": 173,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8073385230"
    },
    {
      "job": 85154929224,
      "time": 74,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8073364561"
    },
    {
      "job": 85154928967,
      "time": 88,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8073367650"
    },
    {
      "job": 85154928779,
      "time": 132,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8073349538"
    },
    {
      "job": 85154929117,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8073369922"
    },
    {
      "job": 85154929055,
      "time": 82,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8073366438"
    },
    {
      "job": 85154929131,
      "time": 76,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8073365106"
    },
    {
      "job": 85154929001,
      "time": 83,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8073367026"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 2.7.0",
      "role": "Depends"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.73.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.72.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "annotation",
    "pathways",
    "differentialexpression",
    "networkenrichment",
    "mirna"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 13,
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/miRNApath.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "filtermirnapath",
    "loadmirnapath",
    "loadmirnapathways",
    "loadmirnatogene",
    "mirnaTable",
    "runEnrichment",
    "show"
  ],
  "_datasets": [
    {
      "name": "mirnaobj",
      "title": "mirnaobj, an S4 object of class \"mirnapath\"",
      "object": "mirnaobj",
      "file": "mirnaobj.rda",
      "class": [
        "mirnapath"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "miRNApath-package",
      "title": "miRNApath: Pathway Enrichment for miRNA Expression Data",
      "topics": [
        "miRNApath-package"
      ]
    },
    {
      "page": "filtermirnapath",
      "title": "Filter miRNApath data",
      "topics": [
        "filtermirnapath"
      ]
    },
    {
      "page": "loadmirnapath",
      "title": "Load miRNApath Data",
      "topics": [
        "loadmirnapath"
      ]
    },
    {
      "page": "loadmirnapathways",
      "title": "Load gene to pathway associations for miRNApath",
      "topics": [
        "loadmirnapathways"
      ]
    },
    {
      "page": "loadmirnatogene",
      "title": "Load miRNA to gene associations for miRNApath",
      "topics": [
        "loadmirnatogene"
      ]
    },
    {
      "page": "mirnaobj",
      "title": "mirnaobj, an S4 object of class \"mirnapath\"",
      "topics": [
        "mirnaobj"
      ]
    },
    {
      "page": "mirnapath-class",
      "title": "S4 class mirnapath and its \"show\" method",
      "topics": [
        "mirnapath-class",
        "show,mirnapath-method"
      ]
    },
    {
      "page": "mirnaTable",
      "title": "Create miRNA Enrichment Summary Table as data.frame",
      "topics": [
        "mirnaTable"
      ]
    },
    {
      "page": "runEnrichment",
      "title": "Perform gene set enrichment analysis on a miRNApath object",
      "topics": [
        "runEnrichment"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "miRNApath.Rnw",
      "filename": "miRNApath.pdf",
      "title": "miRNApath: Pathway Enrichment for miRNA Expression Data",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Requirements for using miRNApath",
        "Loading miRNA expression data",
        "Filtering miRNA data for hits",
        "Loading miRNA-gene associations",
        "Loading gene-pathway associations",
        "Running miRNA pathway enrichment",
        "Exporting miRNA enrichment results",
        "Displaying a heatmap summary"
      ],
      "created": "2013-11-01 20:04:23",
      "modified": "2013-11-01 20:04:23",
      "commits": 1
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "mirnapath",
  "_universes": [
    "bioc",
    "jmw86069"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-07-03T19:07:40.000Z",
      "distro": "resolute",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/caaced563e98fc56e86881a6bc8fbed62f113242b591cd3b81b66fb9ecf2aca8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-07-03T19:07:23.000Z",
      "distro": "resolute",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/e9776512ba3316874e52392c8f2519f5ffb20870e102d31c41fd45877b41bf85",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-07-03T19:05:49.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/92c959c3e457811047c6c4e9fe69e43394bff417078ddc6d8a93b8b79d653b1b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-07-03T19:06:00.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/00fd42f61e9fc9e5b60935dc7e86f4bd2bc99c2a11601f32432b00999bd39e5c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.73.0",
      "date": "2026-07-03T19:06:30.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/d382c2d9115b6e5c9cf473b8c4eec5ff833d2d818ad17f90bda09310fbfea644",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-07-03T19:05:38.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/84b2b13cea6652dd27852e55f82fa25a7d000d2d4d410dfd3590acc5f7201d56",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-07-03T19:05:36.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/a5c69d7b785436322a1952d5a9ca60cf4dbd8dd98265e440228a89ca1bfcf538",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-07-03T19:05:39.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/82445f7ac2ab413742547317b5fa10d5d443605b763adf795d8fdf9dea0f3bbf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28678849189"
    }
  ]
}