{ "_id": "6ae5dada95ca2370cc8d1c03", "Package": "miRNApath", "Type": "Package", "Title": "miRNApath: Pathway Enrichment for miRNA Expression Data", "Version": "1.73.0", "Author": "James M. Ward with contributions from\nYunling Shi, Cindy Richards, John P. Cogswell", "Maintainer": "James M. Ward ", "Description": "This package provides pathway enrichment techniques for\nmiRNA expression data. Specifically, the set of methods handles\nthe many-to-many relationship between miRNAs and the multiple\ngenes they are predicted to target (and thus affect.) It also\nhandles the gene-to-pathway relationships separately. Both\nsteps are designed to preserve the additive effects of miRNAs\non genes, many miRNAs affecting one gene, one miRNA affecting\nmultiple genes, or many miRNAs affecting many genes.", "License": "LGPL-2.1", "biocViews": "Annotation, Pathways, DifferentialExpression,\nNetworkEnrichment, miRNA", "LazyLoad": "Yes", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:01 UTC", "RemoteUrl": "https://github.com/bioc/miRNApath", "RemoteRef": "HEAD", "RemoteSha": "dde663a3f52a0d1d3606678645a82085785c0f65", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-31 10:51:04 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "miRNApath_1.73.0.tar.gz", "_fileid": "https://r2.ropensci.org/892b12a3ffa255c168ec70f4e98e4375861895b30f1cb2d94857447395fc99db", "_filesize": 707375, "_sha256": "892b12a3ffa255c168ec70f4e98e4375861895b30f1cb2d94857447395fc99db", "_expires": "2027-02-08T12:11:04.000Z", "_created": "2026-10-31T10:51:04.000Z", "_published": "2026-10-31T12:11:06.291Z", "_upstream": "https://github.com/bioc/miRNApath", "_status": "success", "_maintainer": { "name": "James M. Ward", "email": "jmw86069@gmail.com", "login": "jmw86069", "orcid": "0000-0002-9510-2848", "description": "", "uuid": 93830 }, "_jobs": [ { "job": 124517659558, "time": 115, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "13039324347" }, { "job": 124517659541, "time": 198, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13039989230" }, { "job": 124517659578, "time": 152, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "13039339307" }, { "job": 124517659569, "time": 82, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13041858571" }, { "job": 124517659530, "time": 105, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13041464801" }, { "job": 124517086101, "time": 173, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "13039324177" }, { "job": 124517659546, "time": 74, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13039774554" }, { "job": 124517659588, "time": 82, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13040470033" }, { "job": 124517659516, "time": 84, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13039889487" }, { "job": 124517659608, "time": 92, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13040320295" } ], "_bioccheck": { "error": 1, "warning": 5, "note": 17 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233", "_commit": { "id": "dde663a3f52a0d1d3606678645a82085785c0f65", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379581 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "methods", "role": "Depends" }, { "package": "R", "version": ">= 2.7.0", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.73.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.72.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "annotation", "pathways", "differentialexpression", "networkenrichment", "mirna" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 481, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 546, "source": "https://www.bioconductor.org/packages/stats/bioc/miRNApath" }, "_mentions": 13, "_searchresults": 9, "_abi": { "exports": [ { "key": "miRNApath::mirnapath", "hash": "31995a1fca72b6ca" } ], "imports": [] }, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/miRNApath.html", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "filtermirnapath", "loadmirnapath", "loadmirnapathways", "loadmirnatogene", "mirnaTable", "runEnrichment", "show" ], "_datasets": [ { "name": "mirnaobj", "title": "mirnaobj, an S4 object of class \"mirnapath\"", "object": "mirnaobj", "file": "mirnaobj.rda", "class": [ "mirnapath" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "miRNApath-package", "title": "miRNApath: Pathway Enrichment for miRNA Expression Data", "topics": [ "miRNApath-package" ] }, { "page": "filtermirnapath", "title": "Filter miRNApath data", "topics": [ "filtermirnapath" ] }, { "page": "loadmirnapath", "title": "Load miRNApath Data", "topics": [ "loadmirnapath" ] }, { "page": "loadmirnapathways", "title": "Load gene to pathway associations for miRNApath", "topics": [ "loadmirnapathways" ] }, { "page": "loadmirnatogene", "title": "Load miRNA to gene associations for miRNApath", "topics": [ "loadmirnatogene" ] }, { "page": "mirnaobj", "title": "mirnaobj, an S4 object of class \"mirnapath\"", "topics": [ "mirnaobj" ] }, { "page": "mirnapath-class", "title": "S4 class mirnapath and its \"show\" method", "topics": [ "mirnapath-class", "show,mirnapath-method" ] }, { "page": "mirnaTable", "title": "Create miRNA Enrichment Summary Table as data.frame", "topics": [ "mirnaTable" ] }, { "page": "runEnrichment", "title": "Perform gene set enrichment analysis on a miRNApath object", "topics": [ "runEnrichment" ] } ], "_rundeps": [], "_vignettes": [ { "source": "miRNApath.Rnw", "filename": "miRNApath.pdf", "title": "miRNApath: Pathway Enrichment for miRNA Expression Data", "engine": "utils::Sweave", "headings": [ "Introduction", "Requirements for using miRNApath", "Loading miRNA expression data", "Filtering miRNA data for hits", "Loading miRNA-gene associations", "Loading gene-pathway associations", "Running miRNA pathway enrichment", "Exporting miRNA enrichment results", "Displaying a heatmap summary" ], "created": "2013-11-01 20:04:23", "modified": "2013-11-01 20:04:23", "commits": 1 } ], "_score": 4.301029995663981, "_indexed": true, "_nocasepkg": "mirnapath", "_universes": [ "bioc", "jmw86069" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.73.0", "date": "2026-10-31T10:54:18.000Z", "distro": "resolute", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/0a0ac085352506d8f72b017c7f4ee3d690181adcabce033273bcdb694a2d6460", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.6.1", "os": "linux", "version": "1.73.0", "date": "2026-10-31T10:53:43.000Z", "distro": "resolute", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/1671531dd704cddc9fe7bec28d30f252f50d6f2ce0093d56c88c4b8a6c0fc550", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.5.3", "os": "mac", "version": "1.73.0", "date": "2026-10-31T12:10:28.000Z", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/f13c7b87ea46c49d364808f0ed1def42f6ac44c8c6088dc41007062618404648", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.6.2", "os": "mac", "version": "1.73.0", "date": "2026-10-31T12:09:53.000Z", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/8335f0c437db78e76a2a106487b42c58325917bb3eb3731b6ce26cbc059bb1a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.6.0", "os": "wasm", "version": "1.73.0", "date": "2026-10-31T10:52:39.000Z", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/5898e72dfc42278e99ac539b0e88bb88a87dd5c9763096ed8ff331537acb8e2c", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.7.0", "os": "win", "version": "1.73.0", "date": "2026-10-31T10:52:08.000Z", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/ce2a0944588e1327826bbedbf13d19d9792bb07cbaff47cc9ada7034acd03499", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.5.3", "os": "win", "version": "1.73.0", "date": "2026-10-31T10:52:17.000Z", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/b6dd34f14aba86185c11d091f2ee9a94052417bb14ff07a08d0e4f71fff7568c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" }, { "r": "4.6.2", "os": "win", "version": "1.73.0", "date": "2026-10-31T10:52:22.000Z", "commit": "dde663a3f52a0d1d3606678645a82085785c0f65", "fileid": "https://r2.ropensci.org/175ff0fb5bb6179e2685407b48bb937b9a43fa2882ceb6524d1e30a0d7878e8a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41194220233" } ] }