{
  "_id": "6abe4b4e99f7aa8c6aa54f62",
  "Package": "miRNApath",
  "Type": "Package",
  "Title": "miRNApath: Pathway Enrichment for miRNA Expression Data",
  "Version": "1.73.0",
  "Author": "James M. Ward <jmw86069@gmail.com> with contributions from\nYunling Shi, Cindy Richards, John P. Cogswell",
  "Maintainer": "James M. Ward <jmw86069@gmail.com>",
  "Description": "This package provides pathway enrichment techniques for\nmiRNA expression data. Specifically, the set of methods handles\nthe many-to-many relationship between miRNAs and the multiple\ngenes they are predicted to target (and thus affect.)  It also\nhandles the gene-to-pathway relationships separately. Both\nsteps are designed to preserve the additive effects of miRNAs\non genes, many miRNAs affecting one gene, one miRNA affecting\nmultiple genes, or many miRNAs affecting many genes.",
  "License": "LGPL-2.1",
  "biocViews": "Annotation, Pathways, DifferentialExpression,\nNetworkEnrichment, miRNA",
  "LazyLoad": "Yes",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:01 UTC",
  "RemoteUrl": "https://github.com/bioc/miRNApath",
  "RemoteRef": "HEAD",
  "RemoteSha": "dde663a3f52a0d1d3606678645a82085785c0f65",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-01 11:45:37 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "miRNApath_1.73.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/5277e6a5049688e24589fa7ffdb2f5bd8276b806b5bb4746fa74afa420cedce9",
  "_filesize": 708765,
  "_sha256": "5277e6a5049688e24589fa7ffdb2f5bd8276b806b5bb4746fa74afa420cedce9",
  "_expires": "2027-01-09T12:00:08.000Z",
  "_created": "2026-10-01T11:45:37.000Z",
  "_published": "2026-10-01T12:00:13.557Z",
  "_bioccheck": {
    "error": 1,
    "warning": 5,
    "note": 17
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860",
  "_status": "success",
  "_upstream": "https://github.com/bioc/miRNApath",
  "_commit": {
    "id": "dde663a3f52a0d1d3606678645a82085785c0f65",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379581
  },
  "_maintainer": {
    "name": "James M. Ward",
    "email": "jmw86069@gmail.com",
    "login": "jmw86069",
    "orcid": "0000-0002-9510-2848",
    "description": "",
    "uuid": 93830
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 110353075051,
      "time": 147,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11160590413"
    },
    {
      "job": 110353075204,
      "time": 229,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11160120473"
    },
    {
      "job": 110353075262,
      "time": 303,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11160265548"
    },
    {
      "job": 110353075242,
      "time": 118,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11160381940"
    },
    {
      "job": 110353075065,
      "time": 106,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11160531362"
    },
    {
      "job": 110351942514,
      "time": 197,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11158914675"
    },
    {
      "job": 110353075170,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11158559882"
    },
    {
      "job": 110353075164,
      "time": 71,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11159460193"
    },
    {
      "job": 110353075116,
      "time": 70,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11159715015"
    },
    {
      "job": 110353075334,
      "time": 79,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11159585182"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 2.7.0",
      "role": "Depends"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.73.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.72.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "annotation",
    "pathways",
    "differentialexpression",
    "networkenrichment",
    "mirna"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 471,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 412,
    "source": "https://www.bioconductor.org/packages/stats/bioc/miRNApath"
  },
  "_mentions": 13,
  "_searchresults": 9,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/miRNApath.html",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "filtermirnapath",
    "loadmirnapath",
    "loadmirnapathways",
    "loadmirnatogene",
    "mirnaTable",
    "runEnrichment",
    "show"
  ],
  "_datasets": [
    {
      "name": "mirnaobj",
      "title": "mirnaobj, an S4 object of class \"mirnapath\"",
      "object": "mirnaobj",
      "file": "mirnaobj.rda",
      "class": [
        "mirnapath"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "miRNApath-package",
      "title": "miRNApath: Pathway Enrichment for miRNA Expression Data",
      "topics": [
        "miRNApath-package"
      ]
    },
    {
      "page": "filtermirnapath",
      "title": "Filter miRNApath data",
      "topics": [
        "filtermirnapath"
      ]
    },
    {
      "page": "loadmirnapath",
      "title": "Load miRNApath Data",
      "topics": [
        "loadmirnapath"
      ]
    },
    {
      "page": "loadmirnapathways",
      "title": "Load gene to pathway associations for miRNApath",
      "topics": [
        "loadmirnapathways"
      ]
    },
    {
      "page": "loadmirnatogene",
      "title": "Load miRNA to gene associations for miRNApath",
      "topics": [
        "loadmirnatogene"
      ]
    },
    {
      "page": "mirnaobj",
      "title": "mirnaobj, an S4 object of class \"mirnapath\"",
      "topics": [
        "mirnaobj"
      ]
    },
    {
      "page": "mirnapath-class",
      "title": "S4 class mirnapath and its \"show\" method",
      "topics": [
        "mirnapath-class",
        "show,mirnapath-method"
      ]
    },
    {
      "page": "mirnaTable",
      "title": "Create miRNA Enrichment Summary Table as data.frame",
      "topics": [
        "mirnaTable"
      ]
    },
    {
      "page": "runEnrichment",
      "title": "Perform gene set enrichment analysis on a miRNApath object",
      "topics": [
        "runEnrichment"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "miRNApath.Rnw",
      "filename": "miRNApath.pdf",
      "title": "miRNApath: Pathway Enrichment for miRNA Expression Data",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Requirements for using miRNApath",
        "Loading miRNA expression data",
        "Filtering miRNA data for hits",
        "Loading miRNA-gene associations",
        "Loading gene-pathway associations",
        "Running miRNA pathway enrichment",
        "Exporting miRNA enrichment results",
        "Displaying a heatmap summary"
      ],
      "created": "2013-11-01 20:04:23",
      "modified": "2013-11-01 20:04:23",
      "commits": 1
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "mirnapath",
  "_universes": [
    "bioc",
    "jmw86069"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-10-01T11:49:16.000Z",
      "distro": "resolute",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/bfca5ef3af52ef304f2fa6f9190aae12e0d8710724a13c10bdad8259398f5f79",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-10-01T11:50:33.000Z",
      "distro": "resolute",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/1436dc12cfbd4176adfdca4dd3780492e09e574a5b994727ab4fbe0f72423ea9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-10-01T11:58:36.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/9354d8e9d86d6c5a0fd1f5e9d91c9d9452734959536ea3363aaecdbab702e478",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-10-01T11:56:50.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/7354230b261ad9ea8b48186a335f505b9e8936f42e4c1a0a005d9665c91935d8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.73.0",
      "date": "2026-10-01T11:47:16.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/4ab83a723df1b19b54ad57f6517d9960c23ca42c228b451f9beb19aa3d607123",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-10-01T11:46:28.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/1b73c5bf7aa9de0804889f7591edaaa85cb68f458c54e1dea9757eaa8915a3d7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-10-01T11:46:34.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/c685c27231f931e8345e90038ed9c488557d7f9119ec8f22af0bb2e56d315a40",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-10-01T11:46:36.000Z",
      "commit": "dde663a3f52a0d1d3606678645a82085785c0f65",
      "fileid": "https://r2.ropensci.org/03f6d12560f270216d8392e3a7c33c657febdb99bce81510bd5b4895d28bee22",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36857018860"
    }
  ]
}