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  "Title": "A comprehensive and high-efficiency tool for converting and\nretrieving the information of miRNAs in different miRBase\nversions",
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  "Date": "2020-12-31",
  "Authors@R": "c(\nperson(\"Taosheng Xu\", \"Taosheng Xu\",  , \"taosheng.x@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8283-7274\")))",
  "Description": "A comprehensive tool for converting and retrieving the\nmiRNA Name, Accession, Sequence, Version, History and Family\ninformation in different miRBase versions. It can process a\nhuge number of miRNAs in a short time without other depends.",
  "License": "GPL (>= 2)",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, miRNA",
  "LazyData": "TRUE",
  "URL": "https://github.com/taoshengxu/miRBaseConverter",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:45:45 UTC",
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    "extra/citation.json",
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  "_realowner": "bioc",
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  "_exports": [
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    "checkMiRNAFamily",
    "checkMiRNAVersion",
    "getAllMiRNAs",
    "getAllSpecies",
    "getAllVersionInfo",
    "getMiRNAHistory",
    "getMiRNASequence",
    "getMiRNATable",
    "goTo_miRBase",
    "goTo_miRNAFamily",
    "miRNA_AccessionToName",
    "miRNA_MatureToPrecursor",
    "miRNA_NameToAccession",
    "miRNA_PrecursorToMature",
    "miRNAVersionConvert"
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      "name": "miRNATest",
      "title": "Dataset: miRNA Test Dataset",
      "object": "miRNATest",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Accession",
        "miRNA_Name"
      ],
      "rows": 600,
      "table": true,
      "tojson": true
    }
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    {
      "page": "checkMiRNAAlive",
      "title": "Check the miRNA status(Alive or Dead)",
      "topics": [
        "checkMiRNAAlive"
      ]
    },
    {
      "page": "checkMiRNAFamily",
      "title": "Check the miRNA family",
      "topics": [
        "checkMiRNAFamily"
      ]
    },
    {
      "page": "checkMiRNAVersion",
      "title": "check the miRNA Version in miRBase",
      "topics": [
        "checkMiRNAVersion"
      ]
    },
    {
      "page": "getAllMiRNAs",
      "title": "Get all miRNAs in the specified miRBase version",
      "topics": [
        "getAllMiRNAs"
      ]
    },
    {
      "page": "getAllSpecies",
      "title": "Get all species of miRNAs embodied in miRBase repository",
      "topics": [
        "getAllSpecies"
      ]
    },
    {
      "page": "getAllVersionInfo",
      "title": "Get all miRBase version information",
      "topics": [
        "getAllVersionInfo"
      ]
    },
    {
      "page": "getMiRNAHistory",
      "title": "Get the detailed information of a single specified miRNA in all miRBase versions.",
      "topics": [
        "getMiRNAHistory"
      ]
    },
    {
      "page": "getMiRNASequence",
      "title": "Get the miRNA sequences",
      "topics": [
        "getMiRNASequence"
      ]
    },
    {
      "page": "getMiRNATable",
      "title": "Get the full miRNAs information table of the specified miRBase version",
      "topics": [
        "getMiRNATable"
      ]
    },
    {
      "page": "goTo_miRBase",
      "title": "Open the miRBase webpages of the specified miRNAs",
      "topics": [
        "goTo_miRBase"
      ]
    },
    {
      "page": "goTo_miRNAFamily",
      "title": "Open the miRNA family webpages of the specified miRNAs",
      "topics": [
        "goTo_miRNAFamily"
      ]
    },
    {
      "page": "miRNA_AccessionToName",
      "title": "miRBase Accession to miRNA Name in specified version",
      "topics": [
        "miRNA_AccessionToName"
      ]
    },
    {
      "page": "miRNA_MatureToPrecursor",
      "title": "Convert the mature miRNAs to the corresponding precursors",
      "topics": [
        "miRNA_MatureToPrecursor"
      ]
    },
    {
      "page": "miRNA_NameToAccession",
      "title": "The miRBase miRNA names with specified version to Accessions",
      "topics": [
        "miRNA_NameToAccession"
      ]
    },
    {
      "page": "miRNA_PrecursorToMature",
      "title": "Convert the precursors to the corresponding mature miRNAs",
      "topics": [
        "miRNA_PrecursorToMature"
      ]
    },
    {
      "page": "miRNATest",
      "title": "Dataset: miRNA Test Dataset",
      "topics": [
        "miRNATest"
      ]
    },
    {
      "page": "miRNAVersionConvert",
      "title": "miRBase version convert for miRNA Names",
      "topics": [
        "miRNAVersionConvert"
      ]
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  "_rundeps": [],
  "_vignettes": [
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      "filename": "miRBaseConverter-vignette.html",
      "title": "miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions",
      "author": "Taosheng Xu",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "miRNA Version check",
        "The conversion between miRBase Accession and miRNA Name",
        "miRBase Accession to miRNA Name",
        "miRNA Name to miRBase Accession",
        "The conversion of miRNA Names between two different miRBase versions",
        "Solution 1: Global searching and matching",
        "Solution 2: miRNA Names conversion with three steps",
        "The conversion between Precursor and Mature miRNA",
        "Mature miRNA to Precursor",
        "Precursor to Mature miRNA",
        "Retrieve the Family category of miRNAs",
        "Retrieve some of detailed miRNA information in miRBase",
        "Retrieve the Sequence of miRNAs",
        "Retrieve all the miRBase version information",
        "Retrieve all the available species in miRBase",
        "Retrieve all the available miRNAs in the specified miRBase version",
        "Retrieve all the history information of a single miRNA",
        "Retrieve the data table for the specified miRBase version",
        "The online retrieving of miRNA information",
        "Open the miRNA webpages in miRBase",
        "Open the miRNA family webpages in miRBase",
        "Conclusion",
        "References"
      ],
      "created": "2017-06-06 15:29:38",
      "modified": "2024-08-24 01:46:37",
      "commits": 10
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