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Two widely used QC metrics to identify a\n‘low-quality’ cell are (i) if the cell includes a high\nproportion of reads that map to mitochondrial DNA encoded genes\n(mtDNA) and (ii) if a small number of genes are detected. miQC\nis data-driven QC metric that jointly models both the\nproportion of reads mapping to mtDNA and the number of detected\ngenes with mixture models in a probabilistic framework to\npredict the low-quality cells in a given dataset.", "URL": "https://github.com/greenelab/miQC", "BugReports": "https://github.com/greenelab/miQC/issues", "License": "BSD_3_clause + file LICENSE", "biocViews": "SingleCell, QualityControl, GeneExpression, Preprocessing,\nSequencing", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "LazyData": "TRUE", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:55:11 UTC", "RemoteUrl": "https://github.com/bioc/miQC", "RemoteRef": "HEAD", "RemoteSha": "ae4fdcd5a99666ac03d51e59d1a632435559049d", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 09:51:04 UTC", "User": "root" }, "Author": "Ariel Hippen [aut, cre],\nStephanie Hicks [aut]", "Maintainer": "Ariel Hippen ", "MD5sum": "5a757897e669b6c93fa65100258c4cdc", "_user": "bioc", "_type": "src", "_file": "miQC_1.21.0.tar.gz", "_fileid": "a1d54c45db12e52051e0da166718fa0d358c2fb5ad264e5121c2c676f9fcb6dc", "_filesize": 130552, "_sha256": "a1d54c45db12e52051e0da166718fa0d358c2fb5ad264e5121c2c676f9fcb6dc", "_created": "2026-05-22T09:51:04.000Z", "_published": "2026-05-22T10:18:34.982Z", "_jobs": [ { "job": 77356571610, "time": 236, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7157762289" }, { "job": 77356571619, "time": 367, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7157800944" }, { "job": 77356571627, "time": 382, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7157804945" }, { "job": 77356571668, "time": 233, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7157761551" }, { "job": 77356571585, "time": 216, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7157756465" }, { "job": 77355784003, "time": 310, "config": "source", "r": "4.6.0", "check": "ERROR", "artifact": "7157691532" }, { "job": 77356571575, "time": 199, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157751385" }, { "job": 77356571647, "time": 1161, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7158043705" }, { "job": 77356571685, "time": 1593, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7158174128" }, { "job": 77356571740, "time": 1421, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7158123323" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 8 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26280659704", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/miQC", "_commit": { "id": "ae4fdcd5a99666ac03d51e59d1a632435559049d", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380911 }, "_maintainer": { "name": "Ariel Hippen", "email": "ariel.hippen@gmail.com", "login": "arielah", "linkedin": "in/arielhippen", "description": "Computational biologist interested in finding and designing the best tools to understand and cure disease. 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