{ "_id": "6a212cb4cd65a98ecbd23a3d", "Package": "methylumi", "Type": "Package", "Title": "Handle Illumina methylation data", "Version": "2.59.0", "Date": "2021-10-27", "Author": "Sean Davis, Pan Du, Sven Bilke, Tim Triche, Jr., Moiz Bootwalla", "biocViews": "DNAMethylation, TwoChannel, Preprocessing, QualityControl,\nCpGIsland", "Maintainer": "Sean Davis ", "Description": "This package provides classes for holding and manipulating\nIllumina methylation data. Based on eSet, it can contain MIAME\ninformation, sample information, feature information, and\nmultiple matrices of data. An \"intelligent\" import function,\nmethylumiR can read the Illumina text files and create a\nMethyLumiSet. methylumIDAT can directly read raw IDAT files\nfrom HumanMethylation27 and HumanMethylation450 microarrays.\nNormalization, background correction, and quality control\nfeatures for GoldenGate, Infinium, and Infinium HD arrays are\nalso included.", "Collate": "AllGenerics.R MethyLumiSet-class.R MethyLumiM-class.R\nMoreGenerics.R Methods.R bgcorr.R coercions.R detectionpval.R\nfeatureFilter.R mclapply_replace.R methylData-class.R\nmethylumIDAT.R methylumiCSV.R methylumiR.R normalization.R\nplotNegOob.R qc.probe.plot.R readIDAT2.R stripMethyLumiSet.R\nutilities.R varFilter.R", "VignetteBuilder": "knitr", "BugReports": "https://github.com/seandavi/methylumi/issues/new", "License": "GPL-2", "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "Config/pak/sysreqs": "make libbz2-dev libicu-dev liblzma-dev libpng-dev\nlibxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:56 UTC", "RemoteUrl": "https://github.com/bioc/methylumi", "RemoteRef": "HEAD", "RemoteSha": "57b4be3912704138b56d0a1b248c2f5482c3e5c0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 07:29:36 UTC", "User": "root" }, "MD5sum": "b2690ab190ec0d6a4b2a84953f491016", "_user": "bioc", "_type": "src", "_file": "methylumi_2.59.0.tar.gz", "_fileid": "be9b5e98821412e8e40918abae2d7960b3b3087402b8a70fbb9c73dd7be15cc5", "_filesize": 7899068, "_sha256": "be9b5e98821412e8e40918abae2d7960b3b3087402b8a70fbb9c73dd7be15cc5", "_created": "2026-06-04T07:29:36.000Z", "_published": "2026-06-04T07:43:48.303Z", "_jobs": [ { "job": 79470826386, "time": 525, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7405688978" }, { "job": 79470826451, "time": 737, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7405757437" }, { "job": 79470826502, "time": 712, "config": 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"betas<-,MethyLumiSet,matrix-method", "boxplot,MethyLumiSet-method", "combine,MethyLumiSet,MethyLumiSet-method", "combine27k450k,MethyLumiSet,MethyLumiSet-method", "controlData,MethyLumiSet-method", "controlData<-,MethyLumiSet", "controlTypes,MethyLumiSet-method", "corplot,MethyLumiSet-method", "Cy3.N,MethyLumiSet-method", "Cy5.N,MethyLumiSet-method", "exprs,MethyLumiSet-method", "getHistory,MethyLumiSet-method", "hist,MethyLumiSet-method", "intensities.IB,MethyLumiSet,character-method", "intensities.IB,MethyLumiSet,missing-method", "intensities.M,MethyLumiSet,character-method", "intensities.M,MethyLumiSet,missing-method", "intensities.OOB,MethyLumiSet,character-method", "intensities.OOB,MethyLumiSet,missing-method", "intensities.OOB.allelic,MethyLumiSet,character,character-method", "intensities.OOB.allelic,MethyLumiSet,missing,missing-method", "intensities.U,MethyLumiSet,character-method", "intensities.U,MethyLumiSet,missing-method", "intensitiesByChannel,MethyLumiSet-method", 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