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  "Package": "methrix",
  "Title": "Fast and efficient summarization of generic bedGraph files from\nBisufite sequencing",
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  "Authors@R": "c(\nperson(\"Anand\",\"Mayakonda\", role = c(\"aut\", \"cre\"), email = \"anand_mt@hotmail.com\", comment = c(ORCID = \"0000-0003-1162-687X\")),\nperson(\"Reka\",\"Toth\", role = \"aut\", email = \"r.toth@dkfz.de\", comment = c(ORCID = \"0000-0002-6096-1052\")),\nperson(\"Rajbir\",\"Batra\", role = \"ctb\"), person(\"Clarissa\",\"Feuerstein-Akgöz\", role = \"ctb\"),\nperson(\"Joschka\",\"Hey\", role = \"ctb\"),\nperson(\"Maximilian\",\"Schönung\", role = \"ctb\"),\nperson(\"Pavlo\",\"Lutsik\", role = \"ctb\"))",
  "Description": "Bedgraph files generated by Bisulfite pipelines often come\nin various flavors. Critical downstream step requires\nsummarization of these files into methylation/coverage\nmatrices. This step of data aggregation is done by Methrix,\nincluding many other useful downstream functions.",
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    "region_filter",
    "remove_snps",
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    "save_HDF5_methrix",
    "subset_methrix",
    "write_bedgraphs",
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      "class": [
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      "topics": [
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      "topics": [
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      ]
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      "title": "Extracts all CpGs from a genome",
      "topics": [
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    },
    {
      "page": "get_matrix",
      "title": "Extract methylation or coverage matrices",
      "topics": [
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    {
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      "title": "Extract and summarize methylation or coverage info by regions of interest",
      "topics": [
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      "title": "Masks too high or too low coverage",
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      "topics": [
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