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  "Title": "An R package for the analysis and result reporting of RNA-Seq\ndata by combining multiple statistical algorithms",
  "Authors@R": "c(person(given=\"Panagiotis\", family=\"Moulos\",\nemail=\"moulos@fleming.gr\", role=c(\"aut\", \"cre\")))",
  "Description": "Provides an interface to several normalization and\nstatistical testing packages for RNA-Seq gene expression data.\nAdditionally, it creates several diagnostic plots, performs\nmeta-analysis by combinining the results of several statistical\ntests and reports the results in an interactive way.",
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  "biocViews": "Software, GeneExpression, DifferentialExpression,\nWorkflowStep, Preprocessing, QualityControl, Normalization,\nReportWriting, RNASeq, Transcription, Sequencing,\nTranscriptomics, Bayesian, Clustering, CellBiology,\nBiomedicalInformatics, FunctionalGenomics, SystemsBiology,\nImmunoOncology, AlternativeSplicing, DifferentialSplicing,\nMultipleComparison, TimeCourse, DataImport, ATACSeq,\nEpigenetics, Regression, ProprietaryPlatforms,\nGeneSetEnrichment, BatchEffect, ChIPSeq",
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  "BugReports": "https://github.com/pmoulos/metaseqR2/issues",
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  "Date": "2026-03-21",
  "Collate": "'annotation.R' 'argcheck.R' 'count.R' 'deseq.R' 'export.R'\n'external.R' 'filter.R' 'json.R' 'main.R' 'meta.R' 'noiseq.R'\n'norm.R' 'metaseqr2-data.R' 'metaseqR2-package.R' 'plot.R'\n'query.R' 'reportdb.R' 'sim.R' 'stat.R' 'tracks.R' 'util.R'\n'zzz.R'",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:52:42 UTC",
  "RemoteUrl": "https://github.com/bioc/metaseqR2",
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  "Author": "Panagiotis Moulos [aut, cre]",
  "Maintainer": "Panagiotis Moulos <moulos@fleming.gr>",
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    {
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      "title": "Import custom annotation to the metaseqR2 annotation database from GTF file",
      "topics": [
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    {
      "page": "combineBonferroni",
      "title": "Combine p-values with Bonferroni's method",
      "topics": [
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    },
    {
      "page": "combineHarmonic",
      "title": "Combine p-values using weights",
      "topics": [
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    {
      "page": "combineMaxp",
      "title": "Combine p-values using the maximum p-value",
      "topics": [
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    {
      "page": "combineMinp",
      "title": "Combine p-values using the minimum p-value",
      "topics": [
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    {
      "page": "combineSimes",
      "title": "Combine p-values with Simes' method",
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    {
      "page": "combineWeight",
      "title": "Combine p-values using weights",
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      "title": "Create bigWig signal tracks",
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      "title": "Create average False (or True) Discovery curves",
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      "title": "Summarized correlation plots",
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      "title": "Diagnostic heatmap of differentially expressed genes",
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      "title": "Diagnostic plot for filtered genes",
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      "title": "Create False (or True) Positive (or Negative) curves",
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    {
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      "title": "Multi-Dimensinal Scale plots or RNA-Seq samples",
      "topics": [
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    {
      "page": "diagplotNoiseq",
      "title": "Diagnostic plots based on the NOISeq package",
      "topics": [
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    {
      "page": "diagplotPairs",
      "title": "Massive X-Y, M-D correlation plots",
      "topics": [
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    {
      "page": "diagplotRoc",
      "title": "Create basic ROC curves",
      "topics": [
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    {
      "page": "diagplotVenn",
      "title": "Venn diagrams when performing meta-analysis",
      "topics": [
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    {
      "page": "diagplotVolcano",
      "title": "(Interactive) volcano plots of differentially expressed genes",
      "topics": [
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      "page": "downsampleCounts",
      "title": "Downsample read counts",
      "topics": [
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      "page": "estimateAufcWeights",
      "title": "Estimate AUFC weights",
      "topics": [
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      "page": "estimateSimParams",
      "title": "Estimate negative binomial parameters from real data",
      "topics": [
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      "title": "Annotation downloader",
      "topics": [
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      "title": "Default parameters for several metaseqr functions",
      "topics": [
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    {
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        "Simple, flexible and reusable annotation for metaseqR2 pipeline",
        "Supported organisms",
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        "Installation of metaseqR2",
        "Setup the database",
        "Use the database",
        "Add a custom annotation",
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        "RNA-Seq data analysis using mulitple statistical algorithms with metaseqR2",
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        "Data filtering",
        "Running the metaseqr2 pipeline",
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