{ "_id": "6ac0e753552a13804ac7d976", "Package": "metaseqR2", "Type": "Package", "Title": "An R package for the analysis and result reporting of RNA-Seq\ndata by combining multiple statistical algorithms", "Authors@R": "c(person(given=\"Panagiotis\", family=\"Moulos\",\nemail=\"moulos@fleming.gr\", role=c(\"aut\", \"cre\")))", "Description": "Provides an interface to several normalization and\nstatistical testing packages for RNA-Seq gene expression data.\nAdditionally, it creates several diagnostic plots, performs\nmeta-analysis by combinining the results of several statistical\ntests and reports the results in an interactive way.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "false", "NeedsCompilation": "yes", "URL": "http://www.fleming.gr", "biocViews": "Software, GeneExpression, DifferentialExpression,\nWorkflowStep, Preprocessing, QualityControl, Normalization,\nReportWriting, RNASeq, Transcription, Sequencing,\nTranscriptomics, Bayesian, Clustering, CellBiology,\nBiomedicalInformatics, FunctionalGenomics, SystemsBiology,\nImmunoOncology, AlternativeSplicing, DifferentialSplicing,\nMultipleComparison, TimeCourse, DataImport, ATACSeq,\nEpigenetics, Regression, ProprietaryPlatforms,\nGeneSetEnrichment, BatchEffect, ChIPSeq", "VignetteBuilder": "knitr", "BugReports": "https://github.com/pmoulos/metaseqR2/issues", "Version": "1.25.0", "Date": "2026-03-21", "Collate": "'annotation.R' 'argcheck.R' 'count.R' 'deseq.R' 'export.R'\n'external.R' 'filter.R' 'json.R' 'main.R' 'meta.R' 'noiseq.R'\n'norm.R' 'metaseqr2-data.R' 'metaseqR2-package.R' 'plot.R'\n'query.R' 'reportdb.R' 'sim.R' 'stat.R' 'tracks.R' 'util.R'\n'zzz.R'", "Config/pak/sysreqs": "cmake make libmagick++-dev gsfonts libbz2-dev\nlibicu-dev libjpeg-dev liblzma-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:52:42 UTC", "RemoteUrl": "https://github.com/bioc/metaseqR2", "RemoteRef": "HEAD", "RemoteSha": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "Packaged": { "Date": "2026-10-03 11:11:45 UTC", "User": "root" }, "Author": "Panagiotis Moulos [aut, cre]", "Maintainer": "Panagiotis Moulos ", "_user": "bioc", "_type": "src", "_file": "metaseqR2_1.25.0.tar.gz", "_fileid": "https://r2.ropensci.org/c1b1c2abb43989e701c6472a344611bbc31ae87b78e7cbcf830f8d1b8f6cb62d", "_filesize": 2702029, "_sha256": "c1b1c2abb43989e701c6472a344611bbc31ae87b78e7cbcf830f8d1b8f6cb62d", "_expires": "2027-01-11T11:30:25.000Z", "_created": "2026-10-03T11:11:45.000Z", "_published": "2026-10-03T11:30:27.538Z", "_jobs": [ { "job": 111191180780, "time": 255, "config": "bioc-checks", "r": "4.6.1", "check": "FAILURE", "artifact": "" }, { "job": 111191180828, "time": 416, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "11273070886" }, { "job": 111191180789, "time": 615, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "11272143856" }, { "job": 111191180832, "time": 423, "config": "linux-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "11272816306" }, { "job": 111191180784, "time": 593, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "11272886354" }, { "job": 111191180814, "time": 429, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "11273280402" }, { "job": 111191180821, "time": 995, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "11272209310" }, { "job": 111191180777, "time": 444, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "11272473295" }, { "job": 111191180794, "time": 641, "config": "macos-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "11273275746" }, { "job": 111189945664, "time": 468, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "11272228101" }, { "job": 111191180736, "time": 216, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11273180382" }, { "job": 111191180792, "time": 526, "config": "windows-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "11273076042" }, { "job": 111191180827, "time": 515, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "11272622054" }, { "job": 111191180830, "time": 481, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "11272966251" }, { "job": 111191180835, "time": 522, "config": "windows-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "11272183833" }, { "job": 111191180818, "time": 488, "config": "windows-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "11273016161" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718", "_status": "failure", "_upstream": "https://github.com/bioc/metaseqR2", "_commit": { "id": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380762 }, "_maintainer": { "name": "Panagiotis Moulos", "email": "moulos@fleming.gr", "login": "pmoulos", "description": "", "uuid": 2979517 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "DESeq2", "role": "Depends" }, { "package": "limma", "role": "Depends" }, { "package": "locfit", "role": "Depends" }, { "package": "splines", "role": "Depends" }, { "package": "ABSSeq", "role": "Imports" }, { "package": "Biobase", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "biomaRt", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "corrplot", "role": "Imports" }, { "package": "DSS", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "EDASeq", "role": "Imports" }, { "package": "edgeR", "role": "Imports" }, { "package": "genefilter", "role": "Imports" }, { "package": "Seqinfo", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Imports" }, { "package": "GenomicAlignments", "role": "Imports" }, { "package": "GenomicFeatures", "role": "Imports" }, { "package": "GenomicRanges", "role": "Imports" }, { "package": "gplots", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "harmonicmeanp", "role": "Imports" }, { "package": "heatmaply", "role": "Imports" }, { "package": "htmltools", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "lattice", "role": "Imports" }, { "package": "log4r", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "NBPSeq", "role": "Imports" }, { "package": "pander", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "qvalue", "role": "Imports" }, { "package": "rmarkdown", "role": "Imports" }, { "package": "rmdformats", "role": "Imports" }, { "package": "Rsamtools", "role": "Imports" }, { "package": "RSQLite", "role": "Imports" }, { "package": "rtracklayer", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "SummarizedExperiment", "role": "Imports" }, { "package": "survcomp", "role": "Imports" }, { "package": "txdbmaker", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "VennDiagram", "role": "Imports" }, { "package": "vsn", "role": "Imports" }, { "package": "yaml", "role": "Imports" }, { "package": "zoo", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "BiocManager", "role": "Suggests" }, { "package": "BSgenome", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "RMySQL", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "TCC", "role": "Enhances" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-41", "n": 1 }, { "week": "2025-44", "n": 2 }, { "week": "2026-10", "n": 1 }, { "week": "2026-12", "n": 1 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.25.0", "bioc": "3.24" }, { "branch": "release", "version": "1.24.0", "bioc": "3.23" } ], "_topics": [ "software", "geneexpression", "differentialexpression", "workflowstep", "preprocessing", "qualitycontrol", "normalization", "reportwriting", "rnaseq", "transcription", "sequencing", "transcriptomics", "bayesian", "clustering", "cellbiology", "biomedicalinformatics", "functionalgenomics", "systemsbiology", "immunooncology", "alternativesplicing", "differentialsplicing", "multiplecomparison", "timecourse", "dataimport", "atacseq", "epigenetics", "regression", "proprietaryplatforms", "genesetenrichment", "batcheffect", "chipseq" ], "_stars": 8, "_contributors": [ { "user": "pmoulos", "count": 144, "uuid": 2979517 }, { "user": "jwokaty", "count": 14, "uuid": 1744257 }, { "user": "nturaga", "count": 10, "uuid": 2746443 }, { "user": "dfanidis", "count": 3, "uuid": 38976559 }, { "user": "hpages", "count": 1, "uuid": 8810451 }, { "user": "martin-g", "count": 1, "uuid": 232002 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 470, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 582, "source": "https://www.bioconductor.org/packages/stats/bioc/metaseqR2" }, "_mentions": 1, "_devurl": "https://github.com/pmoulos/metaseqr2", "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/metaseqR2.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/pmoulos/metaseqr2", "_realowner": "bioc", "_cranurl": false, "_exports": [ "buildAnnotationDatabase", "buildCustomAnnotation", "combineBonferroni", "combineHarmonic", "combineMaxp", "combineMinp", "combineSimes", "combineWeight", "createSignalTracks", "diagplotAvgFtd", "diagplotBoxplot", "diagplotCor", "diagplotDeHeatmap", "diagplotEdaseq", "diagplotFiltered", "diagplotFtd", "diagplotMds", "diagplotNoiseq", "diagplotPairs", "diagplotRoc", "diagplotVenn", "diagplotVolcano", "downsampleCounts", "estimateAufcWeights", "estimateSimParams", "getAnnotation", "getDefaults", "getInstalledAnnotations", "getWeights", "importCustomAnnotation", "loadAnnotation", "makeSimDataSd", "makeSimDataTcc", "metaseqr2", "metaseqrPlot", "metaTest", "normalizeAbsseq", "normalizeDeseq", "normalizeDeseq2", "normalizeDss", "normalizeEdaseq", "normalizeEdger", "normalizeNbpseq", "normalizeNoiseq", "read2count", "readTargets", "statAbsseq", "statDeseq", "statDeseq2", "statDss", "statEdger", "statLimma", "statNbpseq", "statNoiseq" ], "_datasets": [ { "name": "hg19pvalues", "title": "p-values from human RNA-Seq data with two conditions, four samples", "object": "hg19pvalues", "file": "hg19pvalues.rda", "class": [ "matrix", "array" ], "fields": [ "deseq", "deseq2", "edger", "noiseq", "bayseq", "limma", "nbpseq", "absseq", "dss" ], "rows": 1000, "table": true, "tojson": true }, { "name": "libsizeListMm9", "title": "Mouse RNA-Seq data with two conditions, four samples", "object": "mm9GeneData", "file": "mm9GeneData.rda", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "mm9GeneCounts", "title": "Mouse RNA-Seq data with two conditions, four samples", "object": "mm9GeneData", "file": "mm9GeneData.rda", "class": [ "data.frame" ], "fields": [ "chromosome", "start", "end", "gene_id", "gc_content", "strand", "biotype", "gene_name", "e14.5_1", "e14.5_2", "a8w_1", "a8w_2" ], "rows": 3787, "table": true, "tojson": true }, { "name": "sampleListMm9", "title": "Mouse RNA-Seq data with two conditions, four samples", "object": "mm9GeneData", "file": "mm9GeneData.rda", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "buildAnnotationDatabase", "title": "Build a local annotation database for metaseqR2", "topics": [ "buildAnnotationDatabase" ] }, { "page": "buildCustomAnnotation", "title": "Import custom annotation to the metaseqR2 annotation database from GTF file", "topics": [ "buildCustomAnnotation" ] }, { "page": "combineBonferroni", "title": "Combine p-values with Bonferroni's method", "topics": [ "combineBonferroni" ] }, { "page": "combineHarmonic", "title": "Combine p-values using weights", "topics": [ "combineHarmonic" ] }, { "page": "combineMaxp", "title": "Combine p-values using the maximum p-value", "topics": [ "combineMaxp" ] }, { "page": "combineMinp", "title": "Combine p-values using the minimum p-value", "topics": [ "combineMinp" ] }, { "page": "combineSimes", "title": "Combine p-values with Simes' method", "topics": [ "combineSimes" ] }, { "page": "combineWeight", "title": "Combine p-values using weights", "topics": [ "combineWeight" ] }, { "page": "createSignalTracks", "title": "Create bigWig signal tracks", "topics": [ "createSignalTracks" ] }, { "page": "diagplotAvgFtd", "title": "Create average False (or True) Discovery curves", "topics": [ "diagplotAvgFtd" ] }, { "page": "diagplotBoxplot", "title": "Boxplots wrapper for the metaseqR2 package", "topics": [ "diagplotBoxplot" ] }, { "page": "diagplotCor", "title": "Summarized correlation plots", "topics": [ "diagplotCor" ] }, { "page": "diagplotDeHeatmap", "title": "Diagnostic heatmap of differentially expressed genes", "topics": [ "diagplotDeHeatmap" ] }, { "page": "diagplotEdaseq", "title": "Diagnostic plots based on the EDASeq package", "topics": [ "diagplotEdaseq" ] }, { "page": "diagplotFiltered", "title": "Diagnostic plot for filtered genes", "topics": [ "diagplotFiltered" ] }, { "page": "diagplotFtd", "title": "Create False (or True) Positive (or Negative) curves", "topics": [ "diagplotFtd" ] }, { "page": "diagplotMds", "title": "Multi-Dimensinal Scale plots or RNA-Seq samples", "topics": [ "diagplotMds" ] }, { "page": "diagplotNoiseq", "title": "Diagnostic plots based on the NOISeq package", "topics": [ "diagplotNoiseq" ] }, { "page": "diagplotPairs", "title": "Massive X-Y, M-D correlation plots", "topics": [ "diagplotPairs" ] }, { "page": "diagplotRoc", "title": "Create basic ROC curves", "topics": [ "diagplotRoc" ] }, { "page": "diagplotVenn", "title": "Venn diagrams when performing meta-analysis", "topics": [ "diagplotVenn" ] }, { "page": "diagplotVolcano", "title": "(Interactive) volcano plots of differentially expressed genes", "topics": [ "diagplotVolcano" ] }, { "page": "downsampleCounts", "title": "Downsample read counts", "topics": [ "downsampleCounts" ] }, { "page": "estimateAufcWeights", "title": "Estimate AUFC weights", "topics": [ "estimateAufcWeights" ] }, { "page": "estimateSimParams", "title": "Estimate negative binomial parameters from real data", "topics": [ "estimateSimParams" ] }, { "page": "getAnnotation", "title": "Annotation downloader", "topics": [ "getAnnotation" ] }, { "page": "getDefaults", "title": "Default parameters for several metaseqr functions", "topics": [ "getDefaults" ] }, { "page": "getInstalledAnnotations", "title": "Load a metaseqR2 annotation element", "topics": [ "getInstalledAnnotations" ] }, { "page": "getWeights", "title": "Get precalculated statistical test weights", "topics": [ "getWeights" ] }, { "page": "hg19pvalues", "title": "p-values from human RNA-Seq data with two conditions, four samples", "topics": [ "hg19pvalues" ] }, { "page": "importCustomAnnotation", "title": "Import a metaseqR2 custom annotation element", "topics": [ "importCustomAnnotation" ] }, { "page": "libsizeListMm9", "title": "Mouse RNA-Seq data with two conditions, four samples", "topics": [ "libsizeListMm9" ] }, { "page": "loadAnnotation", "title": "Load a metaseqR2 annotation element", "topics": [ "loadAnnotation" ] }, { "page": "makeSimDataSd", "title": "Create simulated counts using the Soneson-Delorenzi method", "topics": [ "makeSimDataSd" ] }, { "page": "makeSimDataTcc", "title": "Create simulated counts using TCC package", "topics": [ "makeSimDataTcc" ] }, { "page": "metaseqr2", "title": "The main metaseqr2 pipeline", "topics": [ "metaseqr2" ] }, { "page": "metaseqrPlot", "title": "Diagnostic plots for the metaseqR2 package", "topics": [ "metaseqrPlot" ] }, { "page": "metaTest", "title": "Meta-analysis using several RNA-Seq statistics", "topics": [ "metaTest" ] }, { "page": "mm9GeneCounts", "title": "Mouse RNA-Seq data with two conditions, four samples", "topics": [ "mm9GeneCounts" ] }, { "page": "normalizeAbsseq", "title": "Normalization based on the ABSSeq package", "topics": [ "normalizeAbsseq" ] }, { "page": "normalizeDeseq", "title": "Normalization based on the DESeq package", "topics": [ "normalizeDeseq" ] }, { "page": "normalizeDeseq2", "title": "Normalization based on the DESeq2 package", "topics": [ "normalizeDeseq2" ] }, { "page": "normalizeDss", "title": "Normalization based on the DSS package", "topics": [ "normalizeDss" ] }, { "page": "normalizeEdaseq", "title": "Normalization based on the EDASeq package", "topics": [ "normalizeEdaseq" ] }, { "page": "normalizeEdger", "title": "Normalization based on the edgeR package", "topics": [ "normalizeEdger" ] }, { "page": "normalizeNbpseq", "title": "Normalization based on the NBPSeq package", "topics": [ "normalizeNbpseq" ] }, { "page": "normalizeNoiseq", "title": "Normalization based on the NOISeq package", "topics": [ "normalizeNoiseq" ] }, { "page": "read2count", "title": "SAM/BAM/BED file reader helper for the metaseqr2 pipeline", "topics": [ "read2count" ] }, { "page": "readTargets", "title": "Creates sample list and BAM/BED file list from file", "topics": [ "readTargets" ] }, { "page": "sampleListMm9", "title": "Mouse RNA-Seq data with two conditions, four samples", "topics": [ "sampleListMm9" ] }, { "page": "statAbsseq", "title": "Statistical testing with ABSSeq", "topics": [ "statAbsseq" ] }, { "page": "statDeseq", "title": "Statistical testing with DESeq", "topics": [ "statDeseq" ] }, { "page": "statDeseq2", "title": "Statistical testing with DESeq2", "topics": [ "statDeseq2" ] }, { "page": "statDss", "title": "Statistical testing with DSS", "topics": [ "statDss" ] }, { "page": "statEdger", "title": "Statistical testing with edgeR", "topics": [ "statEdger" ] }, { "page": "statLimma", "title": "Statistical testing with limma", "topics": [ "statLimma" ] }, { "page": "statNbpseq", "title": "Statistical testing with NBPSeq", "topics": [ "statNbpseq" ] }, { "page": "statNoiseq", "title": "Statistical testing with NOISeq", "topics": [ "statNoiseq" ] } ], "_readme": "https://github.com/bioc/metaseqR2/raw/HEAD/README.md", "_rundeps": [ "abind", "ABSSeq", "affy", "affyio", "annotate", "AnnotationDbi", "aroma.light", "askpass", "assertthat", "assorthead", "base64enc", "beachmat", "BH", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocIO", "biocmake", "BiocManager", "BiocParallel", "biomaRt", "Biostrings", "bit", "bit64", "bitops", "blob", "bookdown", "bootstrap", "BSgenome", "bslib", "bsseq", "ca", "cachem", "callr", "caTools", "cigarillo", "class", "cli", "cluster", "codetools", "colorspace", "corrplot", "cpp11", "crayon", "crosstalk", "curl", "data.table", "DBI", "dbplyr", "DelayedArray", "DelayedMatrixStats", "deldir", "dendextend", "DESeq2", "diagram", "digest", "dir.expiry", "dplyr", "DSS", "DT", "EDASeq", "edgeR", "egg", "evaluate", "farver", "fastmap", "filelock", "FMStable", "fontawesome", "foreach", "formatR", "fs", "futile.logger", "futile.options", "future", "future.apply", "gclus", "genefilter", "generics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "ggplot2", "globals", "glue", "gplots", "gridExtra", "gtable", "gtools", "h5mread", "harmonicmeanp", "HDF5Array", "heatmaply", "highr", "hms", "htmltools", "htmlwidgets", "httr", "httr2", "hwriter", "interp", "ipred", "IRanges", "isoband", "iterators", "jpeg", "jquerylib", "jsonlite", "KEGGREST", "KernSmooth", "knitr", "labeling", "lambda.r", "later", "lattice", "latticeExtra", "lava", "lazyeval", "lifecycle", "limma", "listenv", "locfit", "log4r", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mgcv", "mime", "NBPSeq", "nlme", "nnet", "numDeriv", "openssl", "otel", "pander", "parallelly", "permute", "pillar", "pkgconfig", "plotly", "plyr", "png", "preprocessCore", "prettyunits", "processx", "prodlim", "progress", "progressr", "promises", "ps", "purrr", "pwalign", "qap", "qvalue", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RCurl", "registry", "reshape2", "restfulr", "rhdf5", "rhdf5filters", "Rhdf5lib", "Rhtslib", "rjson", "rlang", "rmarkdown", "rmdformats", "rmeta", "rpart", "Rsamtools", "RSQLite", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "seriation", "shape", "ShortRead", "snow", "SparseArray", "sparseMatrixStats", "SQUAREM", "statmod", "stringi", "stringr", "SummarizedExperiment", "SuppDists", "survcomp", "survival", "survivalROC", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "TSP", "txdbmaker", "UCSC.utils", "utf8", "vctrs", "vegan", "VennDiagram", "viridis", "viridisLite", "vsn", "webshot", "withr", "xfun", "XML", "xml2", "xtable", "XVector", "yaml", "zoo" ], "_score": 5.041392685158225, "_indexed": true, "_nocasepkg": "metaseqr2", "_universes": [ "bioc", "pmoulos" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.25.0", "date": "2026-10-03T11:15:58.000Z", "distro": "resolute", "arch": "aarch64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/4ded3915651deb9854ae7799a669d7051b5107fcdd0d1a2b695ecb613d1a5ecb", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.7.0", "os": "linux", "version": "1.25.0", "date": "2026-10-03T11:17:15.000Z", "distro": "resolute", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/f0676583e871d8743c472e8bc838b761d96576ec330acafd1df8293730132bb5", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.1", "os": "linux", "version": "1.25.0", "date": "2026-10-03T11:15:58.000Z", "distro": "resolute", "arch": "aarch64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/acc85f66da8e08c12eb1f8b9cb7bc112cc93c9e8037753b8c97e8783e3d74153", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.1", "os": "linux", "version": "1.25.0", "date": "2026-10-03T11:17:07.000Z", "distro": "resolute", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/927788eec2127dbce8482d3b0e5577dc341e8598c9b00b698843dcd3decfbacf", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.5.3", "os": "mac", "version": "1.25.0", "date": "2026-10-03T11:14:48.000Z", "arch": "aarch64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/c347a0e1364524dd6d7741f416d23c6083276f40a6f6728dbc2c3fb104c5908c", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.5.3", "os": "mac", "version": "1.25.0", "date": "2026-10-03T11:17:53.000Z", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/09ade9fbf0dd078fdd2f02ed9652f81ec0f8bb56bfe62f76d6bf2a35c116fc1b", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.1", "os": "mac", "version": "1.25.0", "date": "2026-10-03T11:14:59.000Z", "arch": "aarch64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/532866dca0fab91e377cfb7f6035f89aa5a3bb209b685852e0c727ff84bc2fcf", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.1", "os": "mac", "version": "1.25.0", "date": "2026-10-03T11:17:12.000Z", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/45829f301250d7989873c6dda56bb59ff8206c4bb2f8ea070cfde9b7cf1ce605", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.0", "os": "wasm", "version": "1.25.0", "date": "2026-10-03T11:16:43.000Z", "arch": "emscripten", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/e5d25d68f9803e70bc3c36feaf9686e9b4be85599adcfbe974a8b3daee83b104", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.7.0", "os": "win", "version": "1.25.0", "date": "2026-10-03T11:16:23.000Z", "arch": "aarch64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/5f5df475db9c024c35adc1b3a06a6240e8b17a06c193eaeeef8ad420311940a4", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.7.0", "os": "win", "version": "1.25.0", "date": "2026-10-03T11:14:44.000Z", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/50591450a4ae7917a60bab64ce9daf0d516726f13e69306355c62ea7cbf86763", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.5.3", "os": "win", "version": "1.25.0", "date": "2026-10-03T11:14:56.000Z", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/5636f8df39b9335ba84ab94f9afba8dcfc4581cfed8433f1edfb73a869d18c49", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.1", "os": "win", "version": "1.25.0", "date": "2026-10-03T11:16:54.000Z", "arch": "aarch64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/7cb981bf4912b42cfa909f4be8d6d58af770e44a1cd7e59ef53a41a5841cda74", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" }, { "r": "4.6.1", "os": "win", "version": "1.25.0", "date": "2026-10-03T11:14:52.000Z", "arch": "x86_64", "commit": "0bd17c42dc9452d32170153bfa2cabb67d3fd003", "fileid": "https://r2.ropensci.org/a227d0ed25ae8d846626ab01a6555a0a5ea329c4a50e7dc4cd4e13f53567058b", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/37118520718" } ] }