{ "_id": "6a1d27c41d7bb097a0a382f1", "Package": "metahdep", "Type": "Package", "Title": "Hierarchical Dependence in Meta-Analysis", "Version": "1.71.0", "Date": "2011-09-15", "Author": "John R. Stevens, Gabriel Nicholas", "Maintainer": "John R. Stevens ", "Description": "Tools for meta-analysis in the presence of hierarchical\n(and/or sampling) dependence, including with gene expression\nstudies", "Collate": "ES.obj.R metaprep.R getPLM.es.R metahdep.format.R metahdep.R\nmetahdep.FEMA.R metahdep.REMA.R metahdep.HBLM.R\nmetahdep.other.R", "License": "GPL-3", "biocViews": "Microarray, DifferentialExpression", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:43 UTC", "RemoteUrl": "https://github.com/bioc/metahdep", "RemoteRef": "HEAD", "RemoteSha": "9eda8c5a8cb7afab5bf5776f6ba41d17dc44eba7", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-30 09:30:38 UTC", "User": "root" }, "MD5sum": "6d138ad99aa0485f76a3fa31b525e702", "_user": "bioc", "_type": "src", "_file": "metahdep_1.71.0.tar.gz", "_fileid": "b4704aea3a9ed6641c1c2bb90c024fea3d0fbb98098547d2c9daf7ef8d79048e", "_filesize": 597368, "_sha256": "b4704aea3a9ed6641c1c2bb90c024fea3d0fbb98098547d2c9daf7ef8d79048e", "_created": "2026-05-30T09:30:38.000Z", "_published": "2026-06-01T06:33:40.016Z", "_jobs": [ { "job": 78798367996, "time": 132, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7324801224" }, { "job": 78798368398, "time": 124, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "7307203697" }, { "job": 78798368342, "time": 182, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7307254029" }, { "job": 78798368681, "time": 112, "config": "linux-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7307202584" }, { "job": 78798368413, "time": 163, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7307252303" }, { "job": 78798368039, "time": 66, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 78798368047, "time": 158, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 78798368033, "time": 108, "config": "macos-release-arm64", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78798368120, "time": 138, "config": "macos-release-x86_64", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78798367937, "time": 151, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307191331" }, { "job": 78798367997, "time": 82, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 78798368023, "time": 78, "config": "windows-devel", "r": "4.7.0", "check": "FAIL", "artifact": "" }, { "job": 78798368025, "time": 62, "config": "windows-oldrel", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 78798368017, "time": 66, "config": "windows-release", "r": "4.6.0", "check": "FAIL", "artifact": "" } ], "_bioccheck": { "error": 1, "warning": 5, "note": 16 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26675682022", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/metahdep", "_commit": { "id": "9eda8c5a8cb7afab5bf5776f6ba41d17dc44eba7", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379623 }, "_maintainer": { "name": "John R. Stevens", "email": "john.r.stevens@usu.edu", "login": "johnrstevens", "description": "", "uuid": 26309773 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "affyPLM", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.71.0", "bioc": "3.24" }, { "branch": "release", "version": "1.70.0", "bioc": "3.23" } ], "_topics": [ "microarray", "differentialexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 405, "source": "https://www.bioconductor.org/packages/stats/bioc/metahdep" }, "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/metahdep.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "center.columns", "get.M", "get.varsigma.v", "getPLM.es", "id", "LinMod.HBLM.fast.dep", "LinMod.MetAn.dep.FEMA", "LinMod.MetAn.dep.REMA", "LinMod.REMA.delta.split", "LinMod.REMA.dep", "metahdep", "metahdep.check.X", "metahdep.FEMA", "metahdep.format", "metahdep.HBLM", "metahdep.list2dataframe", "metahdep.REMA", "mod", "new.LinMod.HBLM.fast.dep.delta.split", "tr" ], "_datasets": [ { "name": "gloss.Table1", "title": "gloss: Data from the JEBS glossing paper", "object": "gloss", "file": "gloss.rda", "class": [ "data.frame" ], "fields": [ "n2", "n1", "y2", "y1", "s2", "s1", "Rec", "Time", "Part", "Pct", "dfE" ], "rows": 18, "table": true, "tojson": true }, { "name": "gloss.theta", "title": "gloss: Data from the JEBS glossing paper", "object": "gloss", "file": "gloss.rda", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "gloss.V", "title": "gloss: Data from the JEBS glossing paper", "object": "gloss", "file": "gloss.rda", "class": [ "matrix", "array" ], "fields": {}, "rows": 18, "table": true, "tojson": true }, { "name": "gloss.X", "title": "gloss: Data from the JEBS glossing paper", "object": "gloss", "file": "gloss.rda", "class": [ "matrix", "array" ], "fields": [ "Intercept", "Rec2", "Time2", "Part2", "Part3", "Pct2" ], "rows": 18, "table": true, "tojson": true }, { "name": "HGU.DifExp.list", "title": "HGU.DifExp.list: A list of 4 ES.obj objects", "object": "HGU.DifExp.list", "file": "HGU.DifExp.list.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "HGU.newnames", "title": "HGU.newnames", "object": "HGU.newnames", "file": "HGU.newnames.rda", "class": [ "data.frame" ], "fields": [ "chip", "old.name", "new.name" ], "rows": 3105, "table": true, "tojson": true }, { "name": "HGU.prep.list", "title": "HGU.prep.list", "object": "HGU.prep.list", "file": "HGU.prep.list.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "ES.obj-class", "title": "Class ES.obj", "topics": [ "ES.obj-class" ] }, { "page": "getPLM.es", "title": "getPLM.es", "topics": [ "getPLM.es" ] }, { "page": "gloss", "title": "gloss: Data from the JEBS glossing paper", "topics": [ "gloss", "gloss.Table1", "gloss.theta", "gloss.V", "gloss.X" ] }, { "page": "HGU.DifExp.list", "title": "HGU.DifExp.list: A list of 4 ES.obj objects", "topics": [ "HGU.DifExp.list" ] }, { "page": "HGU.newnames", "title": "HGU.newnames", "topics": [ "HGU.newnames" ] }, { "page": "HGU.prep.list", "title": "HGU.prep.list", "topics": [ "HGU.prep.list" ] }, { "page": "metahdep", "title": "metahdep", "topics": [ "metahdep" ] }, { "page": "metahdep.FEMA", "title": "metahdep.FEMA", "topics": [ "metahdep.FEMA" ] }, { "page": "metahdep.format", "title": "metahdep.format", "topics": [ "metahdep.format" ] }, { "page": "metahdep.HBLM", "title": "metahdep.HBLM", "topics": [ "metahdep.HBLM" ] }, { "page": "metahdep.other", "title": "metahdep.other", "topics": [ "center.columns", "get.M", "get.varsigma.v", "id", "LinMod.HBLM.fast.dep", "LinMod.MetAn.dep.FEMA", "LinMod.MetAn.dep.REMA", "LinMod.REMA.delta.split", "LinMod.REMA.dep", "metahdep.check.X", "metahdep.list2dataframe", "mod", "new.LinMod.HBLM.fast.dep.delta.split", "tr" ] }, { "page": "metahdep.REMA", "title": "metahdep.REMA", "topics": [ "metahdep.REMA" ] }, { "page": "metaprep-class", "title": "Class metaprep", "topics": [ "metaprep-class" ] } ], "_rundeps": [], "_vignettes": [ { "source": "metahdep.Rnw", "filename": "metahdep.pdf", "title": "metahdep Primer", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:07:19", "modified": "2013-11-01 20:07:19", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "metahdep", "_universes": [ "bioc", "johnrstevens" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.71.0", "date": "2026-05-30T09:32:42.000Z", "distro": "noble", "arch": "aarch64", "commit": "9eda8c5a8cb7afab5bf5776f6ba41d17dc44eba7", "fileid": "c1f720768dcc06cdfc8a36f74713279ef54060d2052b0a905b0b99ccf31d5953", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675682022" }, { "r": "4.7.0", "os": "linux", "version": "1.71.0", "date": "2026-05-30T09:41:15.000Z", "distro": "noble", "arch": "x86_64", "commit": "9eda8c5a8cb7afab5bf5776f6ba41d17dc44eba7", "fileid": "0436eaab3ca5ded618dad986ad3ad9c90cc222d8d2a029432c6e314899ca3161", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675682022" }, { "r": "4.6.0", "os": "linux", "version": "1.71.0", "date": "2026-05-30T09:32:33.000Z", "distro": "noble", "arch": "aarch64", "commit": "9eda8c5a8cb7afab5bf5776f6ba41d17dc44eba7", "fileid": "c847636fbc401063eed0df7df93d7ec1cb2d3e7d5f279c591ad0f6ceeb082cf4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675682022" }, { "r": "4.6.0", "os": "linux", "version": "1.71.0", "date": "2026-05-30T09:41:00.000Z", "distro": "noble", "arch": "x86_64", "commit": "9eda8c5a8cb7afab5bf5776f6ba41d17dc44eba7", "fileid": "e88cbbbf57b7f434d3622585917052154b810a4dccc3491b92afe9076f7e4dae", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26675682022" } ] }