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  "Title": "Out-of-core statistical computing and signal processing",
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  "Author": "Kylie A. Bemis <k.bemis@northeastern.edu>",
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        "hash": "02355aef4ecd9a4c"
      },
      {
        "key": "Matrix::generic:nnzero",
        "hash": "a51d8b04cb72cc81"
      },
      {
        "key": "ProtGenerics::generic:tolerance",
        "hash": "058b5db42c1afd66"
      }
    ]
  },
  "_rbuild": "4.6.2",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/matter.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/kuwisdelu/matter",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".colDists",
    ".colStats",
    ".rowDists",
    ".rowStats",
    "adata",
    "add_alpha",
    "add_facets",
    "add_mark",
    "aindex",
    "approx1",
    "approx2",
    "Arith",
    "array_ind",
    "as_facets",
    "as_layers",
    "as_plotly",
    "as.altrep",
    "as.array",
    "as.data.frame",
    "as.factor",
    "as.list",
    "as.matrix",
    "as.matter",
    "as.shared",
    "as.sparse",
    "as.vector",
    "asearch",
    "atomdata",
    "atomdata<-",
    "atomindex",
    "atomindex<-",
    "atoms",
    "avg",
    "binpeaks",
    "binvec",
    "bpislocal",
    "bplocalized",
    "bptrystart",
    "bptrystop",
    "bsearch",
    "cbind2",
    "checksum",
    "chunk_apply",
    "chunk_colapply",
    "chunk_lapply",
    "chunk_mapply",
    "chunk_rowapply",
    "chunk_writer",
    "chunkApply",
    "chunked_list",
    "chunked_mat",
    "chunked_vec",
    "chunkify",
    "chunkLapply",
    "chunkMapply",
    "coldist",
    "coldist_at",
    "colDists",
    "colMeans",
    "colscale",
    "colStats",
    "colSums",
    "colsweep",
    "combine",
    "convolve_at",
    "coscore",
    "cpal",
    "cpals",
    "cv_do",
    "cwt",
    "describe_for_display",
    "dims",
    "domain",
    "domain<-",
    "downsample",
    "dpal",
    "dpals",
    "drle",
    "droplevels",
    "Encoding",
    "Encoding<-",
    "enhance_adapt",
    "enhance_adj",
    "enhance_hist",
    "estbase_hull",
    "estbase_loc",
    "estbase_med",
    "estbase_snip",
    "estdim",
    "estnoise_diff",
    "estnoise_filt",
    "estnoise_mad",
    "estnoise_quant",
    "estnoise_sd",
    "estres",
    "eval_at",
    "eval_exprs",
    "fastmap",
    "fetch",
    "filt1_adapt",
    "filt1_bi",
    "filt1_conv",
    "filt1_diff",
    "filt1_gauss",
    "filt1_guide",
    "filt1_ma",
    "filt1_pag",
    "filt1_sg",
    "filt2_adapt",
    "filt2_bi",
    "filt2_conv",
    "filt2_diff",
    "filt2_gauss",
    "filt2_guide",
    "filt2_ma",
    "filtn_adapt",
    "filtn_bi",
    "filtn_conv",
    "filtn_gauss",
    "filtn_ma",
    "findbins",
    "findpeaks",
    "findpeaks_cwt",
    "findpeaks_knn",
    "findridges",
    "flash",
    "getRNGStream",
    "hex2raw",
    "icor",
    "inpoly",
    "iQuote",
    "is_gridded",
    "is.drle",
    "is.matter",
    "is.shared",
    "is.sparse",
    "isoclos",
    "isofun",
    "kdsearch",
    "kdtree",
    "knnmax",
    "knnmin",
    "knnsearch",
    "levels",
    "linear_ind",
    "locmax",
    "locmin",
    "matter",
    "matter_arr",
    "matter_defaults",
    "matter_error",
    "matter_fct",
    "matter_list",
    "matter_log",
    "matter_logger",
    "matter_mat",
    "matter_message",
    "matter_shared_resource",
    "matter_shared_resource_list",
    "matter_shared_resource_pool",
    "matter_str",
    "matter_vec",
    "matter_warn",
    "mean",
    "mem",
    "mem_realized",
    "memcl",
    "memtime",
    "mergepeaks",
    "mi",
    "mi_learn",
    "nndsvd",
    "nnmf_als",
    "nnmf_mult",
    "nnpairs",
    "nnzero",
    "nscentroids",
    "opls_nipals",
    "panel_dim",
    "panel_get",
    "panel_grid",
    "panel_next",
    "panel_prev",
    "panel_set",
    "parse_formula",
    "path",
    "path<-",
    "peakareas",
    "peakheights",
    "peakwidths",
    "pinv",
    "plot",
    "plot_image",
    "plot_signal",
    "pls_kernel",
    "pls_nipals",
    "pls_simpls",
    "pointers",
    "pointers<-",
    "prcomp",
    "prcomp_lanczos",
    "predscore",
    "preplot",
    "preview_for_display",
    "profmem",
    "qmad",
    "qmedian",
    "qorder",
    "qrank",
    "qselect",
    "raw2hex",
    "rbind2",
    "read_atom",
    "read_atoms",
    "readonly",
    "readonly<-",
    "reldiff",
    "rescale_iqr",
    "rescale_range",
    "rescale_ref",
    "rescale_rms",
    "rescale_sum",
    "ricker",
    "RNGStreams",
    "rocscore",
    "roll",
    "rollvec",
    "rowdist",
    "rowdist_at",
    "rowDists",
    "rowMaj",
    "rowMeans",
    "rowscale",
    "rowStats",
    "rowSums",
    "rowsweep",
    "s_all",
    "s_any",
    "s_colstats",
    "s_max",
    "s_mean",
    "s_min",
    "s_nnzero",
    "s_prod",
    "s_range",
    "s_rowstats",
    "s_sd",
    "s_stat",
    "s_sum",
    "s_var",
    "sampler",
    "sampler<-",
    "sd",
    "seq_rel",
    "set_channel",
    "set_coord",
    "set_engine",
    "set_par",
    "set_title",
    "setRNGStream",
    "sgmix",
    "sgmixn",
    "shingles",
    "shm_used",
    "simple_logger",
    "simspec",
    "simspec1",
    "size_bytes",
    "sizeof",
    "SnowfastParam",
    "sparse_mat",
    "sparse_vec",
    "stat_c",
    "struct",
    "t",
    "tempmem",
    "to_raster",
    "to_raster3",
    "tolerance",
    "tolerance<-",
    "trans2d",
    "type",
    "type<-",
    "uuid",
    "var",
    "vip",
    "vizi",
    "vizi_engine",
    "vizi_par",
    "vizi_style",
    "vm_used",
    "warp1_cow",
    "warp1_dtw",
    "warp1_loc",
    "warp2_trans",
    "write_atom",
    "write_atoms"
  ],
  "_help": [
    {
      "page": "approx1",
      "title": "Resampling in 1D with Interpolation",
      "topics": [
        "approx1"
      ]
    },
    {
      "page": "approx2",
      "title": "Resampling in 2D with Interpolation",
      "topics": [
        "approx2"
      ]
    },
    {
      "page": "avg",
      "title": "Central Tendency",
      "topics": [
        "avg"
      ]
    },
    {
      "page": "binpeaks",
      "title": "Peak Processing",
      "topics": [
        "binpeaks",
        "mergepeaks"
      ]
    },
    {
      "page": "binvec",
      "title": "Binned Summaries of a Vector",
      "topics": [
        "binvec"
      ]
    },
    {
      "page": "bsearch",
      "title": "Binary Search with Approximate Matching",
      "topics": [
        "bsearch",
        "reldiff"
      ]
    },
    {
      "page": "checksum",
      "title": "Calculate Checksums and Cryptographic Hashes",
      "topics": [
        "checksum",
        "checksum,atoms-method",
        "checksum,character-method",
        "checksum,matter_-method"
      ]
    },
    {
      "page": "chunkApply",
      "title": "Apply Functions Over Chunks of a List, Vector, or Matrix",
      "topics": [
        "chunkApply",
        "chunkLapply",
        "chunkMapply",
        "chunk_apply",
        "chunk_colapply",
        "chunk_lapply",
        "chunk_mapply",
        "chunk_rowapply",
        "chunk_writer"
      ]
    },
    {
      "page": "chunked-class",
      "title": "Chunked Vectors, Arrays, and Lists",
      "topics": [
        "as.list,chunked-method",
        "chunked",
        "chunked-class",
        "chunked_arr",
        "chunked_arr-class",
        "chunked_list",
        "chunked_list-class",
        "chunked_mat",
        "chunked_mat-class",
        "chunked_vec",
        "chunked_vec-class",
        "chunkify",
        "class:chunked",
        "class:chunked_arr",
        "class:chunked_list",
        "class:chunked_mat",
        "class:chunked_vec",
        "describe_for_display,chunked-method",
        "length,chunked-method",
        "lengths,chunked-method",
        "preview_for_display,chunked-method",
        "preview_for_display,chunked_list-method",
        "[,chunked,ANY,ANY,ANY-method",
        "[[,chunked_list-method",
        "[[,chunked_mat-method",
        "[[,chunked_vec-method"
      ]
    },
    {
      "page": "colscale",
      "title": "Scaling and Centering by Row or Column Based on Grouping",
      "topics": [
        "colscale",
        "colscale,ANY-method",
        "rowscale",
        "rowscale,ANY-method"
      ]
    },
    {
      "page": "rowStats",
      "title": "Row and Column Summary Statistics Based on Grouping",
      "topics": [
        ".colStats",
        ".rowStats",
        "colStats",
        "colStats,ANY-method",
        "colStats,matter_mat-method",
        "colStats,sparse_mat-method",
        "rowStats",
        "rowStats,ANY-method",
        "rowStats,matter_mat-method",
        "rowStats,sparse_mat-method"
      ]
    },
    {
      "page": "colsweep",
      "title": "Sweep out Matrix Summaries Based on Grouping",
      "topics": [
        "colsweep",
        "colsweep,ANY-method",
        "colsweep,matter_mat-method",
        "colsweep,sparse_mat-method",
        "rowsweep",
        "rowsweep,ANY-method",
        "rowsweep,matter_mat-method",
        "rowsweep,sparse_mat-method"
      ]
    },
    {
      "page": "convolve_at",
      "title": "Convolution at Arbitrary Indices",
      "topics": [
        "convolve_at"
      ]
    },
    {
      "page": "coscore",
      "title": "Colocalization Coefficients",
      "topics": [
        "coscore"
      ]
    },
    {
      "page": "cpal",
      "title": "Color Palettes",
      "topics": [
        "add_alpha",
        "cpal",
        "cpals",
        "dpal",
        "dpals"
      ]
    },
    {
      "page": "cv_do",
      "title": "Perform Cross Validation",
      "topics": [
        "cv_do",
        "fitted.cv"
      ]
    },
    {
      "page": "deferred-ops",
      "title": "Deferred Operations on ``matter'' Objects",
      "topics": [
        "Arith",
        "Arith,array,matter_arr-method",
        "Arith,array,sparse_arr-method",
        "Arith,matter_arr,array-method",
        "Arith,matter_arr,vector-method",
        "Arith,sparse_arr,array-method",
        "Arith,sparse_arr,vector-method",
        "Arith,vector,matter_arr-method",
        "Arith,vector,sparse_arr-method",
        "Compare",
        "Logic",
        "Ops"
      ]
    },
    {
      "page": "deprecated",
      "title": "Deprecated and defunct objects in matter",
      "topics": [
        "asearch",
        "deprecated",
        "nnpairs",
        "profmem",
        "sgmixn"
      ]
    },
    {
      "page": "downsample",
      "title": "Downsample a Signal",
      "topics": [
        "downsample",
        "findbins"
      ]
    },
    {
      "page": "drle-class",
      "title": "Delta Run Length Encoding",
      "topics": [
        "as.data.frame,drle-method",
        "as.factor,drle_fct-method",
        "as.integer,drle-method",
        "as.list,drle-method",
        "as.numeric,drle-method",
        "as.vector,drle-method",
        "c,drle-method",
        "class:drle",
        "class:drle_fct",
        "combine,drle,drle-method",
        "combine,drle,numeric-method",
        "combine,drle_fct,drle_fct-method",
        "combine,numeric,drle-method",
        "drle",
        "drle-class",
        "drle_fct",
        "drle_fct-class",
        "droplevels,drle_fct-method",
        "is.drle",
        "length,drle-method",
        "levels,drle_fct-method",
        "levels<-,drle_fct-method",
        "type,drle-method",
        "[,drle,ANY,ANY,ANY-method",
        "[,drle_fct,ANY,ANY,ANY-method"
      ]
    },
    {
      "page": "enhance",
      "title": "Contrast Enhancement",
      "topics": [
        "enhance",
        "enhance_adapt",
        "enhance_adj",
        "enhance_hist"
      ]
    },
    {
      "page": "estbase",
      "title": "Continuum Estimation",
      "topics": [
        "estbase",
        "estbase_hull",
        "estbase_loc",
        "estbase_med",
        "estbase_snip"
      ]
    },
    {
      "page": "estdim",
      "title": "Estimate Raster Dimensions",
      "topics": [
        "estdim"
      ]
    },
    {
      "page": "estnoise",
      "title": "Local Noise Estimation",
      "topics": [
        "estnoise",
        "estnoise_diff",
        "estnoise_filt",
        "estnoise_mad",
        "estnoise_quant",
        "estnoise_sd"
      ]
    },
    {
      "page": "estres",
      "title": "Estimate Signal Resolution",
      "topics": [
        "estres"
      ]
    },
    {
      "page": "fastmap",
      "title": "FastMap Projection",
      "topics": [
        "fastmap",
        "predict.fastmap"
      ]
    },
    {
      "page": "fetch",
      "title": "Move Data Between Shared Memory and File Storage",
      "topics": [
        "fetch",
        "fetch,array-method",
        "fetch,character-method",
        "fetch,factor-method",
        "fetch,list-method",
        "fetch,logical-method",
        "fetch,matrix-method",
        "fetch,numeric-method",
        "fetch,raw-method",
        "flash",
        "flash,array-method",
        "flash,character-method",
        "flash,factor-method",
        "flash,list-method",
        "flash,logical-method",
        "flash,matrix-method",
        "flash,numeric-method",
        "flash,raw-method"
      ]
    },
    {
      "page": "filt1",
      "title": "Smoothing Filters in 1D",
      "topics": [
        "filt1",
        "filt1_adapt",
        "filt1_bi",
        "filt1_conv",
        "filt1_diff",
        "filt1_gauss",
        "filt1_guide",
        "filt1_ma",
        "filt1_pag",
        "filt1_sg"
      ]
    },
    {
      "page": "filt2",
      "title": "Smoothing Filters in 2D",
      "topics": [
        "filt2",
        "filt2_adapt",
        "filt2_bi",
        "filt2_conv",
        "filt2_diff",
        "filt2_gauss",
        "filt2_guide",
        "filt2_ma"
      ]
    },
    {
      "page": "filtn",
      "title": "Smoothing Filters using K-nearest neighbors",
      "topics": [
        "filtn",
        "filtn_adapt",
        "filtn_bi",
        "filtn_conv",
        "filtn_gauss",
        "filtn_ma"
      ]
    },
    {
      "page": "findpeaks",
      "title": "Peak Detection",
      "topics": [
        "findpeaks",
        "locmax",
        "locmin"
      ]
    },
    {
      "page": "findpeaks_cwt",
      "title": "CWT-based Peak Detection",
      "topics": [
        "cwt",
        "findpeaks_cwt",
        "findridges",
        "ricker"
      ]
    },
    {
      "page": "findpeaks_knn",
      "title": "Peak Detection using K-nearest neighbors",
      "topics": [
        "findpeaks_knn",
        "knnmax",
        "knnmin"
      ]
    },
    {
      "page": "inpoly",
      "title": "Point in polygon",
      "topics": [
        "inpoly"
      ]
    },
    {
      "page": "iQuote",
      "title": "Quote Identifiers",
      "topics": [
        "iQuote"
      ]
    },
    {
      "page": "isofun",
      "title": "Isolate Closures for Serialization",
      "topics": [
        "isoclos",
        "isofun"
      ]
    },
    {
      "page": "knnsearch",
      "title": "K-Dimensional Nearest Neighbor Search",
      "topics": [
        "kdsearch",
        "kdtree",
        "knnsearch"
      ]
    },
    {
      "page": "matter_arr-class",
      "title": "Out-of-Core Arrays",
      "topics": [
        "%*%,matrix,matter_mat-method",
        "%*%,matter_mat,matrix-method",
        "%*%,matter_mat,vector-method",
        "%*%,vector,matter_mat-method",
        "as.array,matter_arr-method",
        "as.integer,matter_arr-method",
        "as.logical,matter_arr-method",
        "as.matrix,matter_arr-method",
        "as.numeric,matter_arr-method",
        "as.raw,matter_arr-method",
        "as.vector",
        "as.vector,matter_arr-method",
        "c,matter_arr-method",
        "cbind2,matter_mat,matter_mat-method",
        "cbind2,matter_mat,matter_vec-method",
        "cbind2,matter_vec,matter_mat-method",
        "cbind2,matter_vec,matter_vec-method",
        "class:matter_arr",
        "class:matter_mat",
        "class:matter_vec",
        "combine,matter_arr,ANY-method",
        "crossprod,ANY,matter_mat-method",
        "crossprod,matter_mat,ANY-method",
        "dim,matter_vec-method",
        "dim<-,matter_arr-method",
        "dim<-,matter_vec-method",
        "exp,matter_arr-method",
        "fetch,matter_arr-method",
        "fetch,matter_mat-method",
        "fetch,matter_vec-method",
        "flash,matter_arr-method",
        "flash,matter_mat-method",
        "flash,matter_vec-method",
        "log,matter_arr-method",
        "log10,matter_arr-method",
        "log1p,matter_arr-method",
        "log2,matter_arr-method",
        "matter_arr",
        "matter_arr-class",
        "matter_mat",
        "matter_mat-class",
        "matter_vec",
        "matter_vec-class",
        "rbind2,matter_mat,matter_mat-method",
        "rbind2,matter_mat,matter_vec-method",
        "rbind2,matter_vec,matter_mat-method",
        "rbind2,matter_vec,matter_vec-method",
        "rowMaj",
        "rowMaj,Matrix-method",
        "rowMaj,matrix-method",
        "rowMaj,matter_arr-method",
        "t,matter_arr-method",
        "t,matter_vec-method",
        "tcrossprod,ANY,matter_mat-method",
        "tcrossprod,matter_mat,ANY-method",
        "[,matter_arr,ANY,ANY,ANY-method",
        "[,matter_arr-method",
        "[,matter_mat,ANY,ANY,ANY-method",
        "[,matter_mat-method",
        "[<-,matter_arr,ANY,ANY,ANY-method",
        "[<-,matter_arr-method",
        "[<-,matter_mat,ANY,ANY,ANY-method",
        "[<-,matter_mat-method"
      ]
    },
    {
      "page": "matter_fct-class",
      "title": "Out-of-Core Factors",
      "topics": [
        "as.factor,matter_fct-method",
        "as.vector,matter_fct-method",
        "class:matter_fct",
        "combine,matter_fct,ANY-method",
        "fetch,matter_fct-method",
        "flash,matter_fct-method",
        "levels,matter_fct-method",
        "levels<-,matter_fct-method",
        "matter_fct",
        "matter_fct-class",
        "[,matter_fct,ANY,ANY,ANY-method",
        "[,matter_fct-method",
        "[<-,matter_fct,ANY,ANY,ANY-method",
        "[<-,matter_fct-method"
      ]
    },
    {
      "page": "matter_list-class",
      "title": "Out-of-Core Lists of Vectors",
      "topics": [
        "$,matter_list-method",
        "$<-,matter_list-method",
        "as.list,matter_list-method",
        "as.vector,matter_list-method",
        "c,matter_list-method",
        "class:matter_list",
        "combine,matter_list,ANY-method",
        "dim,matter_list-method",
        "fetch,matter_list-method",
        "flash,matter_list-method",
        "length,matter_list-method",
        "lengths,matter_list-method",
        "matter_list",
        "matter_list-class",
        "[,matter_list,ANY,ANY,ANY-method",
        "[,matter_list-method",
        "[<-,matter_list,ANY,ANY,ANY-method",
        "[<-,matter_list-method",
        "[[,matter_list,ANY,ANY-method",
        "[[,matter_list-method",
        "[[<-,matter_list,ANY,ANY-method",
        "[[<-,matter_list-method"
      ]
    },
    {
      "page": "matter_str-class",
      "title": "Out-of-Core Strings",
      "topics": [
        "as.character,matter_str-method",
        "as.vector,matter_str-method",
        "c,matter_str-method",
        "class:matter_str",
        "combine,matter_str,ANY-method",
        "dim,matter_str-method",
        "Encoding,matter_str-method",
        "Encoding<-,matter_str-method",
        "fetch,matter_str-method",
        "flash,matter_str-method",
        "length,matter_str-method",
        "lengths,matter_str-method",
        "matter_str",
        "matter_str-class",
        "[,matter_str,ANY,ANY,ANY-method",
        "[,matter_str-method",
        "[<-,matter_str,ANY,ANY,ANY-method",
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        "readonly",
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        "readonly<-",
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        "type",
        "type,array-method",
        "type,atoms-method",
        "type,matter-method",
        "type,vector-method",
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        "[[,atoms-method"
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      "page": "matter-options",
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      "topics": [
        "matter-options",
        "matter_defaults"
      ]
    },
    {
      "page": "matter-types",
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      "topics": [
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        "types"
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    },
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      "page": "mem",
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      "topics": [
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        "nnmf_als",
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        "logLik.nscentroids",
        "nscentroids",
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      "page": "peakwidths",
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        "peakheights",
        "peakwidths"
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        "plot_signal"
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