{ "_id": "6aabbd163d719c1f8406e074", "Package": "matchBox", "Type": "Package", "Title": "Utilities to compute, compare, and plot the agreement between\nordered vectors of features (ie. distinct genomic experiments).\nThe package includes Correspondence-At-the-TOP (CAT) analysis.", "Version": "1.55.0", "Date": "2012-08-23", "Author": "Luigi Marchionni , Anuj Gupta\n", "Maintainer": "Luigi Marchionni , Anuj Gupta\n", "Description": "The matchBox package enables comparing ranked vectors of\nfeatures, merging multiple datasets, removing redundant\nfeatures, using CAT-plots and Venn diagrams, and computing\nstatistical significance.", "License": "Artistic-2.0", "LazyLoad": "yes", "biocViews": "Software, Annotation, Microarray, MultipleComparison,\nVisualization", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:37:01 UTC", "RemoteUrl": "https://github.com/bioc/matchBox", "RemoteRef": "HEAD", "RemoteSha": "61e70f2328936b25b6c5fe9911900c79e07465fa", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-17 09:12:28 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "matchBox_1.55.0.tar.gz", "_fileid": "https://r2.ropensci.org/38066dee6b053028165d053193371f88973317d4884e19f9ea3fa40dc7c97107", "_filesize": 752045, "_sha256": "38066dee6b053028165d053193371f88973317d4884e19f9ea3fa40dc7c97107", "_expires": "2026-12-26T10:12:36.000Z", "_created": "2026-09-17T09:12:28.000Z", "_published": "2026-09-17T10:12:38.464Z", "_bioccheck": { "error": 1, "warning": 2, "note": 15 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717", "_status": "success", "_upstream": "https://github.com/bioc/matchBox", "_commit": { "id": "61e70f2328936b25b6c5fe9911900c79e07465fa", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379821 }, "_maintainer": { "name": "Luigi Marchionni", "email": "agupta52@jhu.edu", "login": "marchion", "description": "", "uuid": 1276265 }, "_distro": "resolute", "_jobs": [ { "job": 105144844180, "time": 156, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "10489142247" }, { "job": 105144844230, "time": 124, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "10489635170" }, { "job": 105144844214, "time": 122, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "10489032449" }, { "job": 105144844195, "time": 77, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "10490908161" }, { "job": 105144844197, "time": 83, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "10491432443" }, { "job": 105143897375, "time": 189, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10489525076" }, { "job": 105144844316, "time": 100, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10488957904" }, { "job": 105144844252, "time": 57, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "10488897964" }, { "job": 105144844284, "time": 54, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "10489121987" }, { "job": 105144844468, "time": 58, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "10488942754" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.8.0", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.55.0", "bioc": "3.24" }, { "branch": "release", "version": "1.54.0", "bioc": "3.23" } ], "_topics": [ "software", "annotation", "microarray", "multiplecomparison", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 467, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 400, "source": "https://www.bioconductor.org/packages/stats/bioc/matchBox" }, "_searchresults": 3, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/matchBox.html" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "calcHypPI", "computeCat", "filterRedundant", "mergeData", "plotCat" ], "_datasets": [ { "name": "matchBoxExpression", "title": "Example data: ranking from three differential gene expression experiments", "object": "matchBoxExpression", "file": "matchBoxExpression.rda", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "matchBox-package", "title": "A package to produce Correspondence-At-Top plots (CAT-plots) between ranked list of genes.", "topics": [ "matchBox-package", "matchBox" ] }, { "page": "calcHypPI", "title": "Probability intervals calculation for CAT curves using the hypergeometric distribution.", "topics": [ "calcHypPI" ] }, { "page": "computeCat", "title": "Computing overlap proportions among ordered vectors", "topics": [ "computeCat" ] }, { "page": "filterRedundant", "title": "This functions removes redundant features from a data.frame", "topics": [ "filterRedundant" ] }, { "page": "matchBoxExpression", "title": "Example data: ranking from three differential gene expression experiments", "topics": [ "matchBoxExpression" ] }, { "page": "mergeData", "title": "Merging data.frames based on common identifiers", "topics": [ "mergeData" ] }, { "page": "plotCat", "title": "Plotting correspondence at the top curves", "topics": [ "plotCat" ] } ], "_rundeps": [], "_vignettes": [ { "source": "matchBox.Rnw", "filename": "matchBox.pdf", "title": "Working with the matchBox package", "engine": "utils::Sweave", "headings": [ " Introduction ", " Preparing the Data ", " Correspondance at the Top Curves", " Plotting the results", " System Information", " Literature Cited " ], "created": "2012-10-01 19:18:07", "modified": "2018-11-16 13:42:48", "commits": 3 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "matchbox", "_universes": [ "bioc", "marchion" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.55.0", "date": "2026-09-17T09:14:40.000Z", "distro": "resolute", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/9fe99846954be87f4f606c09e042d355eea1202ebc448d1b6b715b86bc8065ae", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.6.1", "os": "linux", "version": "1.55.0", "date": "2026-09-17T09:14:38.000Z", "distro": "resolute", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/af04b8d1835af45a54ed2bb4df17f3f7bf90cb72bd38f6d9d0f524117d8f2743", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.5.3", "os": "mac", "version": "1.55.0", "date": "2026-09-17T10:07:42.000Z", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/a307816a8655203d667c0e1e5e6d6d8b047dd836f8fac1c5bf91d23622a55504", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.6.1", "os": "mac", "version": "1.55.0", "date": "2026-09-17T10:12:10.000Z", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/000dc1d0c5bd81dc9f53e7a66d4aa235f1536368f582e51c702d1e9662da6419", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.6.0", "os": "wasm", "version": "1.55.0", "date": "2026-09-17T09:14:26.000Z", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/2b0d0771bb30dac68c00109494aeabc495aea84aff3034ff55ded6657903c33f", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.7.0", "os": "win", "version": "1.55.0", "date": "2026-09-17T09:13:26.000Z", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/35a7b8f480824525014daa374b9826dc7682ccc1b162f0e12c6b5fcc82987a24", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.5.3", "os": "win", "version": "1.55.0", "date": "2026-09-17T09:13:25.000Z", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/501aebb7b51ea559fb900239c80c002067524dcdcea60c69baf2c59c8684f8ac", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" }, { "r": "4.6.1", "os": "win", "version": "1.55.0", "date": "2026-09-17T09:13:30.000Z", "commit": "61e70f2328936b25b6c5fe9911900c79e07465fa", "fileid": "https://r2.ropensci.org/febbec8fbc98c55545eb2fa48d1fa52ea4d1a889eaade3ad90f938e3bdf20c96", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/35203546717" } ] }