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"plotClusters", "title": "Plot density plots from clutering results.", "topics": [ "plotClusters" ] }, { "page": "plotCophenetic", "title": "Draw an elbow plot of cophenetic correlation metric.", "topics": [ "plotCophenetic" ] }, { "page": "plotEnrichmentResults", "title": "Plots results from clinicalEnrichment analysis", "topics": [ "plotEnrichmentResults" ] }, { "page": "plotmafSummary", "title": "Plots maf summary.", "topics": [ "plotmafSummary" ] }, { "page": "plotMosdepth", "title": "Plot results from mosdepth output for Tumor/Normal pair", "topics": [ "plotMosdepth" ] }, { "page": "plotMosdepth_t", "title": "Plot results from mosdepth output", "topics": [ "plotMosdepth_t" ] }, { "page": "plotOncodrive", "title": "Plots results from 'oncodrive'", "topics": [ "plotOncodrive" ] }, { "page": "plotPathways", "title": "Plot oncogenic pathways", "topics": [ "plotPathways" ] }, { "page": "plotProtein", "title": "Display protein domains", "topics": [ "plotProtein" ] }, { "page": 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