{ "_id": "6a1c1f0c1d7bb097a0a2f5ff", "Package": "limma", "Version": "3.69.2", "Date": "2026-05-31", "Title": "Linear Models for Microarray and Omics Data", "Description": "Data analysis, linear models and differential expression\nfor omics data.", "Authors@R": "c(person(given = \"Gordon\",\nfamily = \"Smyth\",\nrole = c(\"cre\", \"aut\"),\nemail = \"smyth@wehi.edu.au\",\ncomment = c(ORCID = \"0000-0001-9221-2892\")),\nperson(given = \"Yifang\",\nfamily = \"Hu\",\nrole = \"ctb\"),\nperson(given = \"Matthew\",\nfamily = \"Ritchie\",\nrole = \"ctb\"),\nperson(given = \"Jeremy\",\nfamily = \"Silver\",\nrole = \"ctb\"),\nperson(given = \"James\",\nfamily = \"Wettenhall\",\nrole = \"ctb\"),\nperson(given = \"Davis\",\nfamily = \"McCarthy\",\nrole = \"ctb\"),\nperson(given = \"Di\",\nfamily = \"Wu\",\nrole = \"ctb\"),\nperson(given = \"Wei\",\nfamily = \"Shi\",\nrole = \"ctb\"),\nperson(given = \"Belinda\",\nfamily = \"Phipson\",\nrole = \"ctb\"),\nperson(given = \"Aaron\",\nfamily = \"Lun\",\nrole = \"ctb\"),\nperson(given = \"Natalie\",\nfamily = \"Thorne\",\nrole = \"ctb\"),\nperson(given = \"Alicia\",\nfamily = \"Oshlack\",\nrole = \"ctb\"),\nperson(given = \"Carolyn\",\nfamily = \"de Graaf\",\nrole = \"ctb\"),\nperson(given = \"Yunshun\",\nfamily = \"Chen\",\nrole = \"ctb\"),\nperson(given = \"Goknur\",\nfamily = \"Giner\",\nrole = \"ctb\"),\nperson(given = \"Mette\",\nfamily = \"Langaas\",\nrole = \"ctb\"),\nperson(given = \"Egil\",\nfamily = \"Ferkingstad\",\nrole = \"ctb\"),\nperson(given = \"Marcus\",\nfamily = \"Davy\",\nrole = \"ctb\"),\nperson(given = \"Francois\",\nfamily = \"Pepin\",\nrole = \"ctb\"),\nperson(given = \"Dongseok\",\nfamily = \"Choi\",\nrole = \"ctb\"),\nperson(given = \"Charity\",\nfamily = \"Law\",\nrole = \"ctb\"),\nperson(given = \"Mengbo\",\nfamily = \"Li\",\nrole = \"ctb\"),\nperson(given = \"Lizhong\",\nfamily = \"Chen\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-8326-6781\"))\n)", "License": "GPL (>=2)", "VignetteBuilder": "knitr", "URL": "https://bioinf.wehi.edu.au/limma/", "biocViews": "ExonArray, GeneExpression, Transcription,\nAlternativeSplicing, DifferentialExpression,\nDifferentialSplicing, GeneSetEnrichment, DataImport, Bayesian,\nClustering, Regression, TimeCourse, Microarray, MicroRNAArray,\nmRNAMicroarray, OneChannel, ProprietaryPlatforms, TwoChannel,\nSequencing, RNASeq, BatchEffect, MultipleComparison,\nNormalization, Preprocessing, QualityControl,\nBiomedicalInformatics, CellBiology, Cheminformatics,\nEpigenetics, FunctionalGenomics, Genetics, ImmunoOncology,\nMetabolomics, Proteomics, SystemsBiology, Transcriptomics", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-31 08:18:09 UTC", "RemoteUrl": "https://github.com/bioc/limma", "RemoteRef": "HEAD", "RemoteSha": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-31 11:36:54 UTC", "User": "root" }, "Author": "Gordon Smyth [cre, aut] (ORCID:\n),\nYifang Hu [ctb],\nMatthew Ritchie [ctb],\nJeremy Silver [ctb],\nJames Wettenhall [ctb],\nDavis McCarthy [ctb],\nDi Wu [ctb],\nWei Shi [ctb],\nBelinda Phipson [ctb],\nAaron Lun [ctb],\nNatalie Thorne [ctb],\nAlicia Oshlack [ctb],\nCarolyn de Graaf [ctb],\nYunshun Chen [ctb],\nGoknur Giner [ctb],\nMette Langaas [ctb],\nEgil Ferkingstad [ctb],\nMarcus Davy [ctb],\nFrancois Pepin [ctb],\nDongseok Choi [ctb],\nCharity Law [ctb],\nMengbo Li [ctb],\nLizhong Chen [ctb] (ORCID: )", "Maintainer": "Gordon Smyth ", "MD5sum": "49cadd4ddad875f99d6b4056360a5bad", "_user": "bioc", "_type": "src", "_file": "limma_3.69.2.tar.gz", "_fileid": "8b3703f57cfb972cf9ec8a5020af6b93e44713d47a97de90e8d70b0e99cbd238", "_filesize": 3629591, "_sha256": "8b3703f57cfb972cf9ec8a5020af6b93e44713d47a97de90e8d70b0e99cbd238", "_created": "2026-05-31T11:36:54.000Z", "_published": "2026-05-31T11:44:12.881Z", "_jobs": [ { "job": 78722548434, "time": 241, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7316418976" }, { "job": 78722548487, "time": 197, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7316414228" }, { "job": 78722548488, "time": 233, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7316418275" }, { "job": 78722548491, "time": 261, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7316421233" }, { "job": 78722548484, "time": 226, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7316417311" }, { "job": 78722548492, "time": 157, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7316410079" }, { "job": 78722548479, "time": 381, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7316434071" }, { "job": 78722548493, "time": 169, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7316411198" }, { "job": 78722548485, "time": 337, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7316429483" }, { "job": 78722312939, "time": 244, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7316392683" }, { "job": 78722548449, "time": 144, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7316408703" }, { "job": 78722548453, "time": 176, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7316411990" }, { "job": 78722548451, "time": 182, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7316412805" }, { "job": 78722548454, "time": 185, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7316413270" } ], "_bioccheck": { "error": 1, "warning": 5, "note": 17 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/limma", "_commit": { "id": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "author": "Gordon Smyth ", "committer": "Gordon Smyth ", "message": "Adding R/normalizeBetweenSamples.R\n", "time": 1780215489 }, "_maintainer": { "name": "Gordon Smyth", "email": "smyth@wehi.edu.au", "login": "gksmyth", "description": "Head of the Bioinformatics Division, WEHI", "uuid": 30491078, "orcid": "0000-0001-9221-2892" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "statmod", "role": "Imports" }, { "package": "BiasedUrn", "role": "Suggests" }, { "package": "ellipse", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "locfit", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" }, { "package": "splines", "role": "Suggests" }, { "package": "affy", "role": "Suggests" }, { "package": "AnnotationDbi", "role": "Suggests" }, { "package": "Biobase", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "GO.db", "role": "Suggests" }, { "package": "illuminaio", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "vsn", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 633, "_updates": [ { "week": "2025-31", "n": 2 }, { "week": "2025-35", "n": 2 }, { "week": "2025-40", "n": 2 }, { "week": "2025-42", "n": 1 }, { "week": "2025-43", "n": 1 }, { "week": "2025-44", "n": 2 }, { "week": "2026-15", "n": 1 }, { "week": "2026-17", "n": 3 }, { "week": "2026-18", "n": 2 }, { "week": "2026-21", "n": 1 }, { "week": "2026-22", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "3.69.1", "bioc": "3.24" }, { "branch": "release", "version": "3.68.3", "bioc": "3.23" } ], "_topics": [ "exonarray", "geneexpression", "transcription", "alternativesplicing", "differentialexpression", "differentialsplicing", "genesetenrichment", "dataimport", "bayesian", "clustering", "regression", "timecourse", "microarray", "micrornaarray", "mrnamicroarray", "onechannel", "proprietaryplatforms", "twochannel", "sequencing", "rnaseq", "batcheffect", "multiplecomparison", "normalization", "preprocessing", "qualitycontrol", "biomedicalinformatics", "cellbiology", "cheminformatics", "epigenetics", "functionalgenomics", "genetics", "immunooncology", "metabolomics", "proteomics", "systemsbiology", "transcriptomics" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 64508, "source": "https://www.bioconductor.org/packages/stats/bioc/limma" }, "_mentions": 7776, "_searchresults": 22400, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/limma.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_releases": [ { "version": "1.7.6", "date": "2004-09-06" }, { "version": "1.7.7", "date": "2004-09-19" }, { "version": "1.7.8", "date": "2004-09-27" }, { "version": "1.7.9", "date": "2004-10-06" }, { "version": "1.8.1", "date": "2004-10-11" }, { "version": "1.8.6", "date": "2004-10-27" }, { "version": "1.8.10", "date": "2004-11-23" }, { "version": "1.8.16", "date": "2005-01-09" }, { "version": "1.8.22", "date": "2005-02-24" }, { "version": "1.9.3", "date": "2005-04-25" }, { "version": "2.0.2", "date": "2005-06-20" }, { "version": "2.0.4", "date": "2005-08-08" }, { "version": "2.0.7", "date": "2005-09-02" }, { "version": "2.0.8", "date": "2005-09-19" }, { "version": "2.3.3", "date": "2005-10-25" }, { "version": "2.3.7", "date": "2005-11-09" }, { "version": "2.4.2", "date": "2005-11-15" }, { "version": "2.4.4", "date": "2005-11-29" }, { "version": "2.4.7", "date": "2006-01-05" }, { "version": "2.4.10", "date": "2006-03-07" }, { "version": "2.4.11", "date": "2006-03-10" }, { "version": "2.4.12", "date": "2006-04-05" }, { "version": "2.4.13", "date": "2006-04-07" }, { "version": "2.7.1", "date": "2006-05-02" }, { "version": "2.7.2", "date": "2006-05-04" }, { "version": "2.7.3", "date": "2006-05-29" }, { "version": "2.7.5", "date": "2006-06-22" }, { "version": "2.7.6", "date": "2006-07-27" }, { "version": "2.7.7", "date": "2006-08-03" }, { "version": "2.7.9", "date": "2006-08-07" }, { "version": "2.7.10", "date": "2006-08-30" }, { "version": "2.7.17", "date": "2006-10-03" }, { "version": "2.9.1", "date": "2006-10-04" }, { "version": "2.9.8", "date": "2007-01-05" }, { "version": "2.9.9", "date": "2007-02-11" }, { "version": "2.9.10", "date": "2007-02-13" }, { "version": "2.9.11", "date": "2007-02-18" }, { "version": "2.9.13", "date": "2007-02-25" }, { "version": "2.9.16", "date": "2007-03-27" }, { "version": "2.9.17", "date": "2007-04-04" }, { "version": "2.10.7", "date": "2007-09-24" } ], "_exports": [ "[.EList", "[.EListRaw", "[.MAList", "[.MArrayLM", "[.RGList", "[.TestResults", "alias2Symbol", "alias2SymbolTable", "alias2SymbolUsingNCBI", "anova.MAList", "arrayWeights", "arrayWeightsQuick", "as.data.frame.EList", "as.data.frame.EListRaw", "as.data.frame.MAList", "as.data.frame.MArrayLM", "as.MAList", "as.matrix.EList", "as.matrix.EListRaw", "as.matrix.ExpressionSet", "as.matrix.LumiBatch", "as.matrix.MAList", "as.matrix.MArrayLM", "as.matrix.marrayNorm", "as.matrix.PLMset", "as.matrix.RGList", "as.matrix.vsn", "asMatrixWeights", "auROC", "avearrays", "avearrays.default", "avearrays.EList", "avearrays.MAList", "avedups", "avedups.default", "avedups.EList", "avedups.MAList", "avereps", "avereps.default", "avereps.EList", "avereps.EListRaw", "avereps.MAList", "avereps.RGList", "backgroundCorrect", "backgroundCorrect.matrix", "barcodeplot", "beadCountWeights", "blockDiag", "bwss", "bwss.matrix", "camera", "camera.default", "cameraPR", "cameraPR.default", "cbind.EList", "cbind.EListRaw", "cbind.MAList", "cbind.RGList", "changeLog", "chooseLowessSpan", "classifyTestsF", "contrastAsCoef", "contrasts.fit", "controlStatus", "convest", "coolmap", "cumOverlap", "decideTests", "decideTests.default", "decideTests.MArrayLM", "designI2A", "designI2M", "detectionPValues", "detectionPValues.default", "detectionPValues.EListRaw", "diffSplice", "diffSplice.MArrayLM", "dim.EList", "dim.EListRaw", "dim.MAList", "dim.MArrayLM", "dim.RGList", "dimnames.EList", "dimnames.EListRaw", "dimnames.MAList", "dimnames.MArrayLM", "dimnames.RGList", "dimnames<-.EList", "dimnames<-.EListRaw", "dimnames<-.MAList", "dimnames<-.RGList", "duplicateCorrelation", "eBayes", "exprs.MA", "fitFDist", "fitFDistRobustly", "fitFDistUnequalDF1", "fitGammaIntercept", "fitmixture", "fitted.MArrayLM", "fry", "fry.default", "genas", "geneSetTest", "getDupSpacing", "getEAWP", "getGeneKEGGLinks", "getKEGGPathwayNames", "getLayout", "getLayout2", "getSpacing", "gls.series", "goana", "goana.default", "goana.MArrayLM", "goanaTrend", "gridc", "gridr", "head.EList", "head.EListRaw", "head.MAList", "head.MArrayLM", "head.RGList", "head.TestResults", "heatdiagram", "heatDiagram", "helpMethods", "ids2indices", "imageplot", "imageplot3by2", "interGeneCorrelation", "intraspotCorrelation", "is.fullrank", "isNumeric", "kegga", "kegga.default", "kegga.MArrayLM", "kooperberg", "labels.TestResults", "levels.TestResults", "limmaUsersGuide", "lm.series", "lmFit", "lmscFit", "loessFit", "logcosh", "logsumexp", "MA.RG", "ma3x3.matrix", "ma3x3.spottedarray", "makeContrasts", "makeUnique", "mdplot", "merge.EList", "merge.EListRaw", "merge.MAList", "merge.RGList", "mergeScansRG", "modelMatrix", "modifyWeights", "mrlm", "mroast", "mroast.default", "nec", "neqc", "nonEstimable", "normalizeBetweenArrays", "normalizeBetweenSamples", "normalizeCyclicLoess", "normalizeForPrintorder", "normalizeForPrintorder.rg", "normalizeMedianAbsValues", "normalizeMedianValues", "normalizeQuantiles", "normalizeRobustSpline", "normalizeVSN", "normalizeVSN.default", "normalizeVSN.EListRaw", "normalizeVSN.RGList", "normalizeWithinArrays", "normexp.fit", "normexp.fit.control", "normexp.fit.detection.p", "normexp.signal", "plotDensities", "plotDensities.default", "plotDensities.EList", "plotDensities.EListRaw", "plotDensities.MAList", "plotDensities.RGList", "plotExonJunc", "plotExons", "plotFB", "plotFB.default", "plotFB.EListRaw", "plotFB.RGList", "plotlines", "plotMA", "plotMA.default", "plotMA.EList", "plotMA.EListRaw", "plotMA.MAList", "plotMA.MArrayLM", "plotMA.RGList", "plotMA3by2", "plotMD", "plotMD.default", "plotMD.EList", "plotMD.EListRaw", "plotMD.MAList", "plotMD.MArrayLM", "plotMD.RGList", "plotMDS", "plotMDS.default", "plotMDS.MDS", "plotPrintorder", "plotPrintTipLoess", "plotRLDF", "plotSA", "plotSplice", "plotWithHighlights", "poolVar", "predFCm", "printHead", "printorder", "printtipWeights", "propexpr", "propTrueNull", "protectMetachar", "qqf", "qqt", "rankSumTestWithCorrelation", "rbind.EList", "rbind.EListRaw", "rbind.MAList", "rbind.RGList", "read.columns", "read.idat", "read.ilmn", "read.ilmn.targets", "read.imagene", "read.maimages", "readGAL", "readGenericHeader", "readGPRHeader", "readImaGeneHeader", "readSMDHeader", "readSpotTypes", "readTargets", "removeBatchEffect", "removeExt", "residuals.MArrayLM", "RG.MA", "roast", "roast.default", "romer", "romer.default", "sampleInfoFromGEO", "selectModel", "show", "spotc", "spotr", "squeezeVar", "strsplit2", "subsetListOfArrays", "summary.EList", "summary.EListRaw", "summary.MAList", "summary.MArrayLM", "summary.RGList", "summary.TestResults", "tail.EList", "tail.EListRaw", "tail.MAList", "tail.MArrayLM", "tail.RGList", "tail.TestResults", "targetsA2C", "tmixture.matrix", "tmixture.vector", "topGO", "topKEGG", "topRomer", "topSplice", "topTable", "topTreat", "treat", "tricubeMovingAverage", "trigammaInverse", "trimWhiteSpace", "tZscore", "unique.TestResults", "uniquegenelist", "uniqueTargets", "unwrapdups", "vennCounts", "vennDiagram", "volcanoplot", "voom", "vooma", "voomaByGroup", "voomaLmFit", "voomWithQualityWeights", "weighted.median", "weightedLowess", "wilcoxGST", "write.fit", "wsva", "wtarea", "wtflags", "wtIgnore.Filter", "zscore", "zscoreGamma", "zscoreHyper", "zscoreT" ], "_help": [ { "page": "01Introduction", "title": "Introduction to the LIMMA Package", "topics": [ "limma-package", "01.Introduction", "limma" ] }, { "page": "02classes", "title": "Topic: Classes Defined by this Package", "topics": [ "02.Classes" ] }, { "page": "03reading", "title": "Topic: Reading Microarray Data from Files", "topics": [ "03.ReadingData" ] }, { "page": "04Background", "title": "Topic: Background Correction", "topics": [ "04.Background" ] }, { "page": "05Normalization", "title": "Topic: Normalization of Microarray Data", "topics": [ "05.Normalization" ] }, { "page": "06linearmodels", "title": "Topic: Linear Models for Microarrays", "topics": [ "06.LinearModels" ] }, { "page": "07SingleChannel", "title": "Topic: Individual Channel Analysis of Two-Color Microarrays", "topics": [ "07.SingleChannel" ] }, { "page": "08Tests", "title": "Topic: Hypothesis Testing for Linear Models", "topics": [ "08.Tests" ] }, { "page": "09Diagnostics", "title": "Topic: Diagnostics and Quality Assessment", "topics": [ "09.Diagnostics" ] }, { "page": "10GeneSetTests", "title": "Topic: Gene Set Tests", "concept": [ "gene set tests" ], "topics": [ "10.GeneSetTests" ] }, { "page": "11RNAseq", "title": "Topic: Analysis of RNA-seq Data", "topics": [ "11.RNAseq" ] }, { "page": "alias2Symbol", "title": "Convert Gene Aliases to Official Gene Symbols", "topics": [ "alias2Symbol", "alias2SymbolTable", "alias2SymbolUsingNCBI" ] }, { "page": "anova-method", "title": "ANOVA Table - method", "topics": [ "anova.MAList" ] }, { "page": "arrayWeights", "title": "Array Quality Weights", "topics": [ "arrayWeights" ] }, { "page": "arrayWeightsQuick", "title": "Array Quality Weights", "topics": [ "arrayWeightsQuick" ] }, { "page": "asdataframe", "title": "Turn a Microarray Linear Model Object into a Dataframe", "topics": [ "as.data.frame.EList", "as.data.frame.EListRaw", "as.data.frame.MAList", "as.data.frame.MArrayLM" ] }, { "page": "asmalist", "title": "Convert marrayNorm Object to an MAList Object", "topics": [ "as.MAList" ] }, { "page": "asmatrix", "title": "Turn a Microarray Data Object into a Matrix", "topics": [ "as.matrix.EList", "as.matrix.EListRaw", "as.matrix.ExpressionSet", "as.matrix.LumiBatch", "as.matrix.MAList", "as.matrix.MArrayLM", "as.matrix.marrayNorm", "as.matrix.PLMset", "as.matrix.RGList", "as.matrix.vsn" ] }, { "page": "asMatrixWeights", "title": "asMatrixWeights", "topics": [ "asMatrixWeights" ] }, { "page": "auROC", "title": "Area Under Receiver Operating Curve", "topics": [ "auROC" ] }, { "page": "avearrays", "title": "Average Over Replicate Arrays", "topics": [ "avearrays", "avearrays.default", "avearrays.EList", "avearrays.MAList" ] }, { "page": "avedups", "title": "Average Over Duplicate Spots", "topics": [ "avedups", "avedups.default", "avedups.EList", "avedups.MAList" ] }, { "page": "avereps", "title": "Average Over Irregular Replicate Probes", "topics": [ "avereps", "avereps.default", "avereps.EList", "avereps.EListRaw", "avereps.MAList", "avereps.RGList" ] }, { "page": "backgroundcorrect", "title": "Correct Intensities for Background", "concept": [ "background correction" ], "topics": [ "backgroundCorrect", "backgroundCorrect.matrix" ] }, { "page": "barcodeplot", "title": "Barcode Enrichment Plot", "topics": [ "barcodeplot" ] }, { "page": "beadCountWeights", "title": "Bead Count Weights for Illumina BeadChips", "topics": [ "beadCountWeights" ] }, { "page": "blockDiag", "title": "Block Diagonal Matrix", "topics": [ "blockDiag" ] }, { "page": "bwss", "title": "Between and within sums of squares", "topics": [ "bwss" ] }, { "page": "bwss.matrix", "title": "Between and within sums of squares for matrix", "topics": [ "bwss.matrix" ] }, { "page": "camera", "title": "Competitive Gene Set Test Accounting for Inter-gene Correlation", "concept": [ "gene set tests" ], "topics": [ "camera", "camera.default", "cameraPR", "cameraPR.default", "interGeneCorrelation" ] }, { "page": "cbind", "title": "Combine RGList, MAList, EList or EListRaw Objects", "topics": [ "cbind", "cbind.EList", "cbind.EListRaw", "cbind.MAList", "cbind.RGList", "rbind.EList", "rbind.EListRaw", "rbind.MAList", "rbind.RGList" ] }, { "page": "changelog", "title": "Change Log", "topics": [ "changeLog" ] }, { "page": "chooseLowessSpan", "title": "Choose Span for Local-Weighted Regression Smoothing", "concept": [ "locally-weighted regression smoothing" ], "topics": [ "chooseLowessSpan" ] }, { "page": "classifytestsF", "title": "Genewise Nested F-Tests", "topics": [ "classifyTestsF" ] }, { "page": "contrastAsCoef", "title": "Reform a Design Matrix to that Contrasts Become Coefficients", "topics": [ "contrastAsCoef" ] }, { "page": "contrasts.fit", "title": "Compute Contrasts from Linear Model Fit", "topics": [ "contrasts.fit" ] }, { "page": "controlStatus", "title": "Set Status of each Spot from List of Spot Types", "topics": [ "controlStatus" ] }, { "page": "coolmap", "title": "Heatmap of gene expression values", "topics": [ "coolmap" ] }, { "page": "cumOverlap", "title": "Cumulative Overlap Analysis of Ordered Lists", "concept": [ "gene set enrichment analysis" ], "topics": [ "cumOverlap" ] }, { "page": "decideTests", "title": "Multiple Testing Across Genes and Contrasts", "topics": [ "decideTests", "decideTests.default", "decideTests.MArrayLM" ] }, { "page": "channel2M", "title": "Convert Individual Channel Design Matrix to M-A Format", "concept": [ "separate channel analysis" ], "topics": [ "designI2A", "designI2M" ] }, { "page": "detectionPValue", "title": "Detection P-Values from Negative Controls", "topics": [ "detectionPValues", "detectionPValues.default", "detectionPValues.EListRaw" ] }, { "page": "diffSplice", "title": "Differential Transcript or Exon Usage", "concept": [ "RNA-seq", "Differential transcript usage", "Differential usage" ], "topics": [ "diffSplice", "diffSplice.MArrayLM" ] }, { "page": "dim", "title": "Retrieve the Dimensions of an RGList, MAList or MArrayLM Object", "topics": [ "dim.EList", "dim.EListRaw", "dim.MAList", "dim.MArrayLM", "dim.RGList" ] }, { "page": "dimnames", "title": "Retrieve the Dimension Names of an RGList, MAList, EList, EListRaw or MArrayLM Object", "topics": [ "dimnames.EList", "dimnames.EListRaw", "dimnames.MAList", "dimnames.MArrayLM", "dimnames.RGList", "dimnames<-.EList", "dimnames<-.EListRaw", "dimnames<-.MAList", "dimnames<-.RGList" ] }, { "page": "dupcor", "title": "Correlation Between Duplicates or Within Blocks", "topics": [ "duplicateCorrelation" ] }, { "page": "ebayes", "title": "Empirical Bayes Statistics for Differential Expression", "topics": [ "eBayes", "treat" ] }, { "page": "EList", "title": "Expression List (EList) class", "topics": [ "EList-class", "EListRaw-class" ] }, { "page": "exprsMA", "title": "Extract Log-Expression Matrix from MAList", "topics": [ "exprs.MA" ] }, { "page": "fitfdist", "title": "Moment Estimation of Scaled F-Distribution", "concept": [ "empirical Bayes" ], "topics": [ "fitFDist", "fitFDistRobustly", "fitFDistUnequalDF1" ] }, { "page": "fitGammaIntercept", "title": "Fit Intercept to Vector of Gamma Distributed Variates", "topics": [ "fitGammaIntercept" ] }, { "page": "fitmixture", "title": "Fit Mixture Model by Non-Linear Least Squares", "topics": [ "fitmixture" ] }, { "page": "fitted.MArrayLM", "title": "Fitted Values Method for MArrayLM Fits", "concept": [ "regression" ], "topics": [ "fitted.MArrayLM" ] }, { "page": "genas", "title": "Genuine Association of Gene Expression Profiles", "topics": [ "genas" ] }, { "page": "geneSetTest", "title": "Mean-rank Gene Set Test", "concept": [ "gene set tests" ], "topics": [ "geneSetTest", "wilcoxGST" ] }, { "page": "getEAWP", "title": "Extract Basic Data from Expression Data Objects", "topics": [ "getEAWP" ] }, { "page": "getlayout", "title": "Extract the Print Layout of an Array from the GAL File", "topics": [ "getDupSpacing", "getLayout", "getLayout2" ] }, { "page": "getSpacing", "title": "Get Numerical Spacing", "topics": [ "getSpacing" ] }, { "page": "gls.series", "title": "Fit Linear Model to Microarray Data by Generalized Least Squares", "topics": [ "gls.series" ] }, { "page": "goana", "title": "Gene Ontology or KEGG Pathway Analysis", "concept": [ "gene set tests" ], "topics": [ "getGeneKEGGLinks", "getKEGGPathwayNames", "goana", "goana.default", "goana.MArrayLM", "kegga", "kegga.default", "kegga.MArrayLM" ] }, { "page": "goanaTrend", "title": "Estimate DE Trend for Gene Ontology or KEGG Pathway Analysis", "concept": [ "gene set tests" ], "topics": [ "goanaTrend" ] }, { "page": "gridspotrc", "title": "Row and Column Positions on Microarray", "topics": [ "gridc", "gridr", "spotc", "spotr" ] }, { "page": "head", "title": "Return the First to Last Part of a Data Object", "topics": [ "head.EList", "head.EListRaw", "head.MAList", "head.MArrayLM", "head.RGList", "head.TestResults", "tail.EList", "tail.EListRaw", "tail.MAList", "tail.MArrayLM", "tail.RGList", "tail.TestResults" ] }, { "page": "heatdiagram", "title": "Stemmed Heat Diagram", "concept": [ "plots" ], "topics": [ "heatDiagram", "heatdiagram" ] }, { "page": "helpMethods", "title": "Prompt for Method Help Topics", "topics": [ "helpMethods" ] }, { "page": "ids2indices", "title": "Convert Gene Identifiers to Indices for Gene Sets", "concept": [ "gene set tests" ], "topics": [ "ids2indices" ] }, { "page": "imageplot", "title": "Image Plot of Microarray Statistics", "topics": [ "imageplot" ] }, { "page": "imageplot3by2", "title": "Write Imageplots to Files", "topics": [ "imageplot3by2" ] }, { "page": "intraspotCorrelation", "title": "Intra-Spot Correlation for Two Color Data", "topics": [ "intraspotCorrelation" ] }, { "page": "isfullrank", "title": "Check for Full Column Rank", "topics": [ "is.fullrank", "nonEstimable" ] }, { "page": "isnumeric", "title": "Test for Numeric Argument", "topics": [ "isNumeric" ] }, { "page": "kooperberg", "title": "Kooperberg Model-Based Background Correction for GenePix data", "topics": [ "kooperberg" ] }, { "page": "LargeDataObject", "title": "Large Data Object - class", "topics": [ "LargeDataObject-class", "show,LargeDataObject-method" ] }, { "page": "limmaUsersGuide", "title": "View Limma User's Guide", "topics": [ "limmaUsersGuide" ] }, { "page": "lm.series", "title": "Fit Linear Model to Microrray Data by Ordinary Least Squares", "topics": [ "lm.series" ] }, { "page": "lmFit", "title": "Linear Model for Series of Arrays", "topics": [ "lmFit" ] }, { "page": "lmscFit", "title": "Fit Linear Model to Individual Channels of Two-Color Data", "concept": [ "separate channel analysis" ], "topics": [ "lmscFit" ] }, { "page": "loessfit", "title": "Univariate Lowess With Prior Weights", "concept": [ "locally-weighted regression smoothing" ], "topics": [ "loessFit" ] }, { "page": "logcosh", "title": "Logarithm of cosh", "concept": [ "mathematical functions" ], "topics": [ "logcosh" ] }, { "page": "logsumexp", "title": "Log Sum of Exponentials", "topics": [ "logsumexp" ] }, { "page": "ma3x3", "title": "Two dimensional Moving Averages with 3x3 Window", "topics": [ "ma3x3.matrix", "ma3x3.spottedarray" ] }, { "page": "makeContrasts", "title": "Construct Matrix of Custom Contrasts", "topics": [ "makeContrasts" ] }, { "page": "makeunique", "title": "Make Values of Character Vector Unique", "topics": [ "makeUnique" ] }, { "page": "malist", "title": "M-value, A-value Expression List - class", "topics": [ "MAList-class" ] }, { "page": "marraylm", "title": "Microarray Linear Model Fit - class", "topics": [ "MArrayLM-class" ] }, { "page": "mdplot", "title": "Mean-Difference Plot", "concept": [ "plots" ], "topics": [ "mdplot" ] }, { "page": "merge", "title": "Merge RGList or MAList Data Objects", "topics": [ "merge.EList", "merge.EListRaw", "merge.MAList", "merge.RGList" ] }, { "page": "mergeScansRG", "title": "Merge two scans of two-color arrays", "topics": [ "mergeScans", "mergeScansRG" ] }, { "page": "modelMatrix", "title": "Construct Design Matrix", "topics": [ "modelMatrix", "uniqueTargets" ] }, { "page": "modifyWeights", "title": "Modify Matrix of Weights By Control Status of Rows", "topics": [ "modifyWeights" ] }, { "page": "mrlm", "title": "Fit Linear Model to Microarray Data by Robust Regression", "topics": [ "mrlm" ] }, { "page": "nec", "title": "NormExp Background Correction and Normalization Using Control Probes", "concept": [ "background correction", "illumina beadchips" ], "topics": [ "nec", "neqc" ] }, { "page": "normalizebetweenarrays", "title": "Normalize Between Arrays", "concept": [ "normalization" ], "topics": [ "normalizeBetweenArrays", "normalizeBetweenSamples" ] }, { "page": "normalizeCyclicLoess", "title": "Normalize Columns of a Matrix by Cyclic Loess", "concept": [ "locally-weighted regression smoothing" ], "topics": [ "normalizeCyclicLoess" ] }, { "page": "normalizeprintorder", "title": "Print-Order Normalization", "topics": [ "normalizeForPrintorder", "normalizeForPrintorder.rg", "plotPrintorder" ] }, { "page": "normalizeMedianAbsValues", "title": "Normalize Columns of a Matrix to have the Median Absolute Value", "topics": [ "normalizeMedianAbsValues", "normalizeMedianValues" ] }, { "page": "normalizequantiles", "title": "Normalize Columns of a Matrix to have the same Quantiles", "topics": [ "normalizeQuantiles" ] }, { "page": "normalizeRobustSpline", "title": "Normalize Single Microarray Using Shrunk Robust Splines", "topics": [ "normalizeRobustSpline" ] }, { "page": "normalizeVSN", "title": "Variance Stabilizing Normalization (vsn)", "topics": [ "normalizeVSN", "normalizeVSN.default", "normalizeVSN.EListRaw", "normalizeVSN.RGList" ] }, { "page": "normalizeWithinArrays", "title": "Normalize Within Arrays", "topics": [ "MA.RG", "normalizeWithinArrays", "RG.MA" ] }, { "page": "normexpfit", "title": "Fit Normal+Exp Convolution Model to Observed Intensities", "topics": [ "normexp.fit" ] }, { "page": "normexpfitcontrol", "title": "Normexp Model Parameter Estimation Aided by Negative Controls", "topics": [ "normexp.fit.control" ] }, { "page": "normexpfitdetectionp", "title": "Estimate Normexp Model Parameter Using Negative Controls Inferred from Regular Probes", "topics": [ "normexp.fit.detection.p" ] }, { "page": "normexpsignal", "title": "Expected Signal Given Observed Foreground Under Normal+Exp Model", "topics": [ "normexp.signal" ] }, { "page": "plotDensities", "title": "Plot Expression Densities", "concept": [ "plots" ], "topics": [ "plotDensities", "plotDensities.default", "plotDensities.EList", "plotDensities.EListRaw", "plotDensities.MAList", "plotDensities.RGList" ] }, { "page": "plotExonJunc", "title": "Differential splicing plot with junctions", "concept": [ "differential usage" ], "topics": [ "plotExonJunc" ] }, { "page": "plotExons", "title": "Plot exons of differentially expressed gene", "concept": [ "differential usage" ], "topics": [ "plotExons" ] }, { "page": "plotFB", "title": "FB-Plot", "concept": [ "plots" ], "topics": [ "plotFB", "plotFB.default", "plotFB.EListRaw", "plotFB.RGList" ] }, { "page": "plotlines", "title": "plotlines", "concept": [ "plots" ], "topics": [ "plotlines" ] }, { "page": "plotma", "title": "MA-Plot of Expression Data", "topics": [ "plotMA", "plotMA.default", "plotMA.EList", "plotMA.EListRaw", "plotMA.MAList", "plotMA.MArrayLM", "plotMA.RGList" ] }, { "page": "plotma3by2", "title": "Write MA-Plots to Files", "topics": [ "plotMA3by2" ] }, { "page": "plotMD", "title": "Mean-Difference Plot of Expression Data", "concept": [ "plots" ], "topics": [ "plotMD", "plotMD.default", "plotMD.EList", "plotMD.EListRaw", "plotMD.MAList", "plotMD.MArrayLM", "plotMD.RGList" ] }, { "page": "plotMDS", "title": "Multidimensional Scaling Plot of Distances Between Expression Profiles", "concept": [ "plots" ], "topics": [ "MDS-class", "plotMDS", "plotMDS.default", "plotMDS.MDS", "show,MDS-method" ] }, { "page": "plotprinttiploess", "title": "MA Plots by Print-Tip Group", "topics": [ "plotPrintTipLoess" ] }, { "page": "plotRLDF", "title": "Plot of regularized linear discriminant functions for microarray data", "topics": [ "plotRLDF" ] }, { "page": "plotSA", "title": "Sigma vs A plot for microarray linear model", "concept": [ "plots" ], "topics": [ "plotSA" ] }, { "page": "plotSplice", "title": "Differential usage plot", "concept": [ "differential usage" ], "topics": [ "plotSplice" ] }, { "page": "plotWithHighlights", "title": "Scatterplot With Highlighting of Special Points", "topics": [ "plotWithHighlights" ] }, { "page": "poolvar", "title": "Pool Sample Variances with Unequal Variances", "topics": [ "poolVar" ] }, { "page": "predFCm", "title": "Predictive log fold change for microarrays", "concept": [ "empirical Bayes" ], "topics": [ "predFCm" ] }, { "page": "printHead", "title": "Print Leading Rows of Large Objects", "topics": [ "printHead" ] }, { "page": "PrintLayout", "title": "Print Layout - class", "topics": [ "PrintLayout-class" ] }, { "page": "printorder", "title": "Identify Order in which Spots were Printed", "topics": [ "printorder" ] }, { "page": "printtipWeights", "title": "Sub-array Quality Weights", "topics": [ "printtipWeights", "printtipWeightsSimple" ] }, { "page": "propexpr", "title": "Estimate Proportion of Expressed Probes", "topics": [ "propexpr" ] }, { "page": "propTrueNull", "title": "Estimate Proportion of True Null Hypotheses", "topics": [ "convest", "estimate.m0", "propTrueNull" ] }, { "page": "protectMetachar", "title": "Protect Metacharacters", "topics": [ "protectMetachar" ] }, { "page": "qqt", "title": "Student's t or Fisher's F Quantile-Quantile Plot", "topics": [ "qqf", "qqt" ] }, { "page": "qualwt", "title": "Spot Quality Weights for Spotted Microarrays", "topics": [ "QualityWeights", "wtarea", "wtflags", "wtIgnore.Filter" ] }, { "page": "rankSumTestwithCorrelation", "title": "Two Sample Wilcoxon-Mann-Whitney Rank Sum Test Allowing For Correlation", "topics": [ "rankSumTestWithCorrelation" ] }, { "page": "read.columns", "title": "Read specified columns from a file", "topics": [ "read.columns" ] }, { "page": "read.idat", "title": "Read Illumina expression data from IDAT files", "concept": [ "illumina beadchips", "microarray data file" ], "topics": [ "read.idat" ] }, { "page": "read.ilmn", "title": "Read Illumina Expression Data", "concept": [ "reading data", "illumina beadchips", "microarray data file" ], "topics": [ "read.ilmn" ] }, { "page": "read.ilmn.targets", "title": "Read Illumina Data from a Target Dataframe", "concept": [ "illumina beadchips" ], "topics": [ "read.ilmn.targets" ] }, { "page": "read.maimages", "title": "Read RGList or EListRaw from Image Analysis Output Files", "concept": [ "microarray data file" ], "topics": [ "read.imagene", "read.maimages" ] }, { "page": "readgal", "title": "Read a GAL file", "topics": [ "readGAL" ] }, { "page": "readGPRHeader", "title": "Read Header Information from Microarray Raw Data File", "concept": [ "microarray data file" ], "topics": [ "readGenericHeader", "readGPRHeader", "readSMDHeader" ] }, { "page": "readImaGeneHeader", "title": "Read ImaGene Header Information", "topics": [ "readImaGeneHeader" ] }, { "page": "readSpotTypes", "title": "Read Spot Types File", "topics": [ "readSpotTypes" ] }, { "page": "readTargets", "title": "Read Targets File", "topics": [ "readTargets" ] }, { "page": "removeBatchEffect", "title": "Remove Batch Effect", "topics": [ "removeBatchEffect" ] }, { "page": "removeext", "title": "Remove Common Extension from File Names", "topics": [ "removeExt" ] }, { "page": "residuals.MArrayLM", "title": "Extract Residuals from MArrayLM Fit", "topics": [ "residuals.MArrayLM" ] }, { "page": "rglist", "title": "Red, Green Intensity List - class", "topics": [ "coerce,RGList,exprSet2-method", "RGList-class" ] }, { "page": "roast", "title": "Rotation Gene Set Tests", "concept": [ "gene set tests" ], "topics": [ "fry", "fry.default", "mroast", "mroast.default", "roast", "Roast-class", "roast.default", "show,Roast-method" ] }, { "page": "romer", "title": "Rotation Gene Set Enrichment Analysis", "concept": [ "gene set tests" ], "topics": [ "romer", "romer.default" ] }, { "page": "sampleInfoFromGEO", "title": "Read Sample Characteristics From GEO Series Matrix File", "topics": [ "sampleInfoFromGEO" ] }, { "page": "selectmodel", "title": "Select Appropriate Linear Model", "topics": [ "selectModel" ] }, { "page": "squeezeVar", "title": "Squeeze Sample Variances", "concept": [ "empirical Bayes" ], "topics": [ "squeezeVar" ] }, { "page": "strsplit2", "title": "Split Composite Names", "topics": [ "strsplit2" ] }, { "page": "subsetting", "title": "Subset RGList, MAList, EListRaw, EList, MArrayLM or TestResults Objects", "topics": [ "subsetListOfArrays", "subsetting", "[.EList", "[.EListRaw", "[.MAList", "[.MArrayLM", "[.RGList", "[.TestResults" ] }, { "page": "summary", "title": "Summaries of Microarray Data Objects", "topics": [ "summary.EList", "summary.EListRaw", "summary.MAList", "summary.MArrayLM", "summary.RGList" ] }, { "page": "targetsA2C", "title": "Convert Two-Color Targets Dataframe from One-Row-Per-Array to One-Row-Per-Channel", "concept": [ "separate channel analysis" ], "topics": [ "array2channel", "targetsA2C" ] }, { "page": "TestResults", "title": "Matrix of Test Results - class", "topics": [ "labels.TestResults", "levels.TestResults", "show,TestResults-method", "summary.TestResults", "TestResults-class", "unique.TestResults" ] }, { "page": "tmixture", "title": "Estimate Scale Factor in Mixture of t-Distributions", "topics": [ "tmixture.matrix", "tmixture.vector" ] }, { "page": "topGO", "title": "Table of Top GO Terms or Top KEGG Pathways", "concept": [ "gene set tests" ], "topics": [ "topGO", "topKEGG" ] }, { "page": "topRomer", "title": "Top Gene Set Testing Results from Romer", "concept": [ "gene set tests" ], "topics": [ "topRomer" ] }, { "page": "topSplice", "title": "Top Table of Differential Transcript Usage", "concept": [ "differential usage" ], "topics": [ "topSplice" ] }, { "page": "toptable", "title": "Table of Top Genes from Linear Model Fit", "topics": [ "topTable", "topTreat" ] }, { "page": "tricubeMovingAverage", "title": "Moving Average Smoother With Tricube Weights", "concept": [ "locally-weighted regression smoothing" ], "topics": [ "tricubeMovingAverage" ] }, { "page": "trigammainverse", "title": "Inverse Trigamma Function", "concept": [ "mathematical functions" ], "topics": [ "trigammaInverse" ] }, { "page": "trimWhiteSpace", "title": "Trim Leading and Trailing White Space", "topics": [ "trimWhiteSpace" ] }, { "page": "uniquegenelist", "title": "Eliminate Duplicate Names from the Gene List", "topics": [ "uniquegenelist" ] }, { "page": "unwrapdups", "title": "Unwrap Duplicate Spot Values from Rows into Columns", "topics": [ "unwrapdups" ] }, { "page": "venn", "title": "Venn Diagrams", "topics": [ "vennCounts", "vennDiagram" ] }, { "page": "volcanoplot", "title": "Volcano Plot", "concept": [ "plots" ], "topics": [ "volcanoplot" ] }, { "page": "voom", "title": "Transform RNA-Seq Counts for Linear Modeling With Precision Weights", "topics": [ "voom" ] }, { "page": "vooma", "title": "Convert Variance Trend to Observation Precision Weights for Microarray-style Data", "topics": [ "vooma", "voomaByGroup" ] }, { "page": "voomaLmFit", "title": "Apply vooma-lmFit Pipeline With Automatic Estimation of Sample Weights and Block Correlation", "topics": [ "voomaLmFit" ] }, { "page": "voomWithQualityWeights", "title": "Transform RNA-Seq Counts for Linear Modeling With Precision and Sample Weights", "topics": [ "voomWithQualityWeights" ] }, { "page": "weightedmedian", "title": "Weighted Median", "topics": [ "weighted.median" ] }, { "page": "weightedLowess", "title": "LOWESS Smoother with Prior Weights", "concept": [ "locally-weighted regression smoothing" ], "topics": [ "weightedLowess" ] }, { "page": "writefit", "title": "Write MArrayLM Object to a File", "topics": [ "write.fit" ] }, { "page": "wsva", "title": "Weighted Surrogate Variable Analysis", "topics": [ "wsva" ] }, { "page": "zscore", "title": "Transform non-normal random deviates to standard normal", "topics": [ "zscore", "zscoreGamma", "zscoreHyper" ] }, { "page": "zscoreT", "title": "Transform t-statistics to standard normal", "topics": [ "tZscore", "zscoreT" ] } ], "_rundeps": [ "statmod" ], "_vignettes": [ { "source": "intro.Rmd", "filename": "intro.html", "title": "A brief introduction to limma", "engine": "knitr::rmarkdown", "headings": [ "What is it?", "How to get help", "Further reading" ], "created": "2023-06-10 01:18:21", "modified": "2026-05-19 12:17:52", "commits": 3 }, { "source": "usersguide.Rnw", "filename": "usersguide.pdf", "title": "limma User's Guide", "engine": "utils::Sweave", "headings": [], "created": "2023-06-18 08:44:54", "modified": "2023-06-18 08:44:54", "commits": 1 } ], "_score": 13.780809241170656, "_indexed": true, "_nocasepkg": "limma", "_universes": [ "bioc", "gksmyth" ], "_previous": "3.69.1", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.69.2", "date": "2026-05-31T11:39:53.000Z", "distro": "noble", "arch": "aarch64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "943e99e917b2904e9138b46097f788e671f0dfeebaf358e869a4d54afcfdc493", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.7.0", "os": "linux", "version": "3.69.2", "date": "2026-05-31T11:40:24.000Z", "distro": "noble", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "66218946f5b45b7bae6079a442ba0da6d9960097caa288c409842173c4fce7fc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.6.0", "os": "linux", "version": "3.69.2", "date": "2026-05-31T11:40:56.000Z", "distro": "noble", "arch": "aarch64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "399d1b52ce39f384d12303dabf76d0f5dc4496f6eca602f8bad769e315e1af4f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.6.0", "os": "linux", "version": "3.69.2", "date": "2026-05-31T11:40:22.000Z", "distro": "noble", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "49b76146ff33e093d9cb72490e68a0c0c792590a2bfb956d9999aa564c4c985a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.5.3", "os": "mac", "version": "3.69.2", "date": "2026-05-31T11:39:16.000Z", "arch": "aarch64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "e4920939ab8730c66aeea70717afb86681ad4b79e9fef184739fe6d94b926d3d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.5.3", "os": "mac", "version": "3.69.2", "date": "2026-05-31T11:42:03.000Z", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "ca606ea88cf855b6db8ca7f3b39539d267277d53cb3652ad3aa55f14e78cc3b4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.6.0", "os": "mac", "version": "3.69.2", "date": "2026-05-31T11:39:27.000Z", "arch": "aarch64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "8c323722c4a5804f3d9db402c25150760d4c815627cb3b304adbd13977fbc762", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.6.0", "os": "mac", "version": "3.69.2", "date": "2026-05-31T11:41:10.000Z", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "ebba91773887720b9bd0f0eab376441b6728e46a10eb32fcd7fa9573b64aa1b9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.6.0", "os": "wasm", "version": "3.69.2", "date": "2026-05-31T11:39:53.000Z", "arch": "emscripten", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "e2ec3d7d5b80a88fc42cb23985e2af1d41d042eaeccfe940c0755c1ff2c2ee76", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.7.0", "os": "win", "version": "3.69.2", "date": "2026-05-31T11:39:03.000Z", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "cb6a427b2ca6dfedae7be5cc1ead54931c123051d960d0f4c5185825d1169374", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.5.3", "os": "win", "version": "3.69.2", "date": "2026-05-31T11:38:56.000Z", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "4fd20434ee091c775076484fa11b7b373aadd4f4bba15fa127413ee0bc8afb32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" }, { "r": "4.6.0", "os": "win", "version": "3.69.2", "date": "2026-05-31T11:39:13.000Z", "arch": "x86_64", "commit": "14eabaeb695945b45ceb885ac8d4c61232639ea5", "fileid": "5fc2a694ee5ac64233f24fe7d19bffc10f007346c86f8bdb1ffc7537c6cb00ba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26711445485" } ] }