{ "_id": "6a51d1489b92047c28d513ae", "Package": "levi", "Type": "Package", "Title": "Landscape Expression Visualization Interface", "Version": "1.31.0", "Authors@R": "c(person(given = \"Rafael\",\nfamily = \"Pilan\",\nrole = \"aut\",\nemail = \"rafael.pilan@unesp.br\"),\nperson(given = \"Isabelle\",\nfamily = \"Silva\",\nrole = \"ctb\"),\nperson(given = \"Agnes\",\nfamily = \"Takeda\",\nrole = \"ctb\"),\nperson(given = \"Jose\",\nfamily = \"Rybarczyk Filho\",\nrole = c(\"ctb\", \"cre\", \"ths\"),\nemail = \"jose.luiz@unesp.br\")\n)", "Maintainer": "Jose Luiz Rybarczyk Filho ", "Description": "The tool integrates data from biological networks with\ntranscriptomes, displaying a heatmap with surface curves to\nevidence the altered regions.", "Encoding": "UTF-8", "RoxygenNote": "7.0.1", "License": "GPL (>= 2)", "biocViews": "GeneExpression, Sequencing, Network, Software", "VignetteBuilder": "knitr", "LazyLoad": "yes", "NeedsCompilation": "yes", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:48:55 UTC", "RemoteUrl": "https://github.com/bioc/levi", "RemoteRef": "HEAD", "RemoteSha": "49b18d8c632f07a6e1169b299905592200c43eac", "Packaged": { "Date": "2026-07-11 05:08:19 UTC", "User": "root" }, "Author": "Rafael Pilan [aut],\nIsabelle Silva [ctb],\nAgnes Takeda [ctb],\nJose Rybarczyk Filho [ctb, cre, ths]", "_user": "bioc", "_type": "src", "_file": "levi_1.31.0.tar.gz", "_fileid": "https://r2.ropensci.org/8786c4bfa1eb375c6dc3948d6d79f8e87c98cdd00087b5d59f6114b811a22e74", "_filesize": 2789964, "_sha256": "8786c4bfa1eb375c6dc3948d6d79f8e87c98cdd00087b5d59f6114b811a22e74", "_expires": "2026-10-19T05:14:46.000Z", "_created": "2026-07-11T05:08:19.000Z", "_published": "2026-07-11T05:14:48.426Z", "_bioccheck": { "error": 0, "warning": 2, "note": 13 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236", "_status": "success", "_upstream": "https://github.com/bioc/levi", "_commit": { "id": "49b18d8c632f07a6e1169b299905592200c43eac", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380535 }, "_maintainer": { "name": "Jose Luiz Rybarczyk Filho", "email": "jose.luiz@unesp.br", "login": "jrybarczyk", "description": "", "uuid": 13757354 }, "_distro": "resolute", "_jobs": [ { "job": 86513231232, "time": 169, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "8245042753" }, { "job": 86513231270, "time": 220, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "8245050623" }, { "job": 86513231259, "time": 243, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8245053536" }, { "job": 86513231298, "time": 207, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8245048835" }, { "job": 86513231284, "time": 274, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8245058248" }, { "job": 86513231276, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8245048232" }, { "job": 86513231264, "time": 303, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8245067864" }, { "job": 86513231236, "time": 134, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8245049463" }, { "job": 86513231245, "time": 242, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8245056587" }, { "job": 86512776258, "time": 341, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8245015984" }, { "job": 86513231252, "time": 159, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8245041256" }, { "job": 86513231239, "time": 207, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8245048271" }, { "job": 86513231287, "time": 158, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8245040853" }, { "job": 86513231261, "time": 179, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8245044439" } ], "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "DT", "version": ">= 0.4", "role": "Imports" }, { "package": "RColorBrewer", "version": ">= 1.1-2", "role": "Imports" }, { "package": "colorspace", "version": ">= 1.3-2", "role": "Imports" }, { "package": "dplyr", "version": ">= 0.7.4", "role": "Imports" }, { "package": "ggplot2", "version": ">= 2.2.1", "role": "Imports" }, { "package": "httr", "version": ">= 1.3.1", "role": "Imports" }, { "package": "igraph", "version": ">= 1.2.1", "role": "Imports" }, { "package": "reshape2", "version": ">= 1.4.3", "role": "Imports" }, { "package": "shiny", "version": ">= 1.0.5", "role": "Imports" }, { "package": "shinydashboard", "version": ">= 0.7.0", "role": "Imports" }, { "package": "shinyjs", "version": ">= 1.0", "role": "Imports" }, { "package": "xml2", "version": ">= 1.2.0", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.18", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rmarkdown", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.31.0", "bioc": "3.24" }, { "branch": "release", "version": "1.30.0", "bioc": "3.23" } ], "_topics": [ "geneexpression", "sequencing", "network", "software", "cpp" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 348, "source": "https://www.bioconductor.org/packages/stats/bioc/levi" }, "_searchresults": 6, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/levi.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "levi", "LEVIui", "readExpColumn" ], "_help": [ { "page": "levi", "title": "levi", "topics": [ "levi" ] }, { "page": "LEVIui", "title": "LEVIui", "topics": [ "LEVIui" ] }, { "page": "readExpColumn", "title": "readExpColumn", "topics": [ "readExpColumn" ] } ], "_rundeps": [ "askpass", "base64enc", "brio", "bslib", "cachem", "callr", "cli", "colorspace", "commonmark", "cpp11", "crayon", "crosstalk", "curl", "desc", "diffobj", "digest", "dplyr", "DT", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "httr", "igraph", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "openssl", "otel", "pillar", "pkgbuild", "pkgconfig", "pkgload", "plyr", "praise", "processx", "promises", "ps", "R6", "rappdirs", "RColorBrewer", "Rcpp", "reshape2", "rlang", "rmarkdown", "rprojroot", "S7", "sass", "scales", "shiny", "shinydashboard", "shinyjs", "sourcetools", "stringi", "stringr", "sys", "testthat", "tibble", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "waldo", "withr", "xfun", "xml2", "xtable", "yaml" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "levi.Rmd", "filename": "levi.html", "title": "levi - Landscape Expression Visualization Interface", "author": "Isabelle M. da Silva, José R. Pilan, Agnes A. S. Takeda, Jose L. Rybarczyk-Filho", "engine": "knitr::rmarkdown", "headings": [ "Overview", "Files", "Gene Expression Levels", "Biological Network", "Graphical User Interface (GUI)", "Script", "Session information", "Reference" ], "created": "2018-10-04 16:53:56", "modified": "2021-09-01 21:42:30", "commits": 5 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "levi", "_universes": [ "bioc", "jrybarczyk" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.31.0", "date": "2026-07-11T05:11:30.000Z", "distro": "resolute", "arch": "aarch64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/46be81896c20edb31e246a73518c2bc874baca2374a3b1884a1209767a1b4e4b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.7.0", "os": "linux", "version": "1.31.0", "date": "2026-07-11T05:11:33.000Z", "distro": "resolute", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/14ad5b32cd6a1f3acf0cd7691e588f7d790401b0aeb05e4799d525d5c839f3e8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.6.1", "os": "linux", "version": "1.31.0", "date": "2026-07-11T05:11:24.000Z", "distro": "resolute", "arch": "aarch64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/14266ebaedca242bff09c022f63d6b4727d3a53a6ff1f9d3cf116f9c29e111ff", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.6.1", "os": "linux", "version": "1.31.0", "date": "2026-07-11T05:12:03.000Z", "distro": "resolute", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/60ddc2205d47ae6058fcf41635d396f31d2f1955b8810ed6651d9c6268808b12", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.5.3", "os": "mac", "version": "1.31.0", "date": "2026-07-11T05:11:31.000Z", "arch": "aarch64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/7fb1c7c87ac5060bae261638a84ac1447cce114a0766bf99fa4fc1f12546b2c2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.5.3", "os": "mac", "version": "1.31.0", "date": "2026-07-11T05:12:27.000Z", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/d028a8c8b38f81d1d6b19ee64b8459af0cc783740e1f45a850dacacfbdcc9bb7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.6.1", "os": "mac", "version": "1.31.0", "date": "2026-07-11T05:11:28.000Z", "arch": "aarch64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/ff1adebdae7741e330e6b92903bdfed0c0f833eed83b1ec62c54da569b12a263", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.6.1", "os": "mac", "version": "1.31.0", "date": "2026-07-11T05:11:30.000Z", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/2be5fe850f743dfedf4345f65f89509257a70f5e8ec7e9a4ce09775bc67d2b65", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.6.0", "os": "wasm", "version": "1.31.0", "date": "2026-07-11T05:11:18.000Z", "arch": "emscripten", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/e7bbe6e6160d8efdb02827aefd4fc1ee836135c94bac70e868bf0c2b214a6a93", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.7.0", "os": "win", "version": "1.31.0", "date": "2026-07-11T05:10:02.000Z", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/8129a9c0de1cc6a1e9e2451f789e7ed68451c618ac8c8f69ba1aa807c2f88cb2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.5.3", "os": "win", "version": "1.31.0", "date": "2026-07-11T05:09:47.000Z", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/c6a66a065295f24ed4dd0ad7441af8c1bef20b56317bee4e78be11345aac800b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" }, { "r": "4.6.1", "os": "win", "version": "1.31.0", "date": "2026-07-11T05:10:10.000Z", "arch": "x86_64", "commit": "49b18d8c632f07a6e1169b299905592200c43eac", "fileid": "https://r2.ropensci.org/3f5c32e1589504e126ee3e041b1b47ebecb2eec1474d6feba693bad79b37675c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29140579236" } ] }