{
  "_id": "6a493d6da19c9318096e75e7",
  "Package": "koinar",
  "Type": "Package",
  "Title": "KoinaR - Remote machine learning inference using Koina",
  "Version": "1.7.0",
  "Authors@R": "c(person(given = \"Ludwig\", family = \"Lautenbacher\",\nemail = \"ludwig.lautenbacher@tum.de\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-1540-5911\")),\nperson(given = \"Christian\", family = \"Panse\", email = \"cp@fgcz.ethz.ch\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-1975-3064\")))",
  "Description": "A client to simplify fetching predictions from the Koina\nweb service. Koina is a model repository enabling the remote\nexecution of models. Predictions are generated as a response to\nHTTP/S requests, the standard protocol used for nearly all web\ntraffic.",
  "License": "Apache License 2.0",
  "URL": "https://github.com/wilhelm-lab/koina",
  "BugReports": "https://github.com/wilhelm-lab/koina/issues",
  "Encoding": "UTF-8",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "biocViews": "MassSpectrometry, Proteomics, Infrastructure, Software",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:43 UTC",
  "RemoteUrl": "https://github.com/bioc/koinar",
  "RemoteRef": "HEAD",
  "RemoteSha": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
  "Packaged": {
    "Date": "2026-07-04 01:40:56 UTC",
    "User": "root"
  },
  "Author": "Ludwig Lautenbacher [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-1540-5911>),\nChristian Panse [aut] (ORCID: <https://orcid.org/0000-0003-1975-3064>)",
  "Maintainer": "Ludwig Lautenbacher <ludwig.lautenbacher@tum.de>",
  "_user": "bioc",
  "_type": "src",
  "_file": "koinar_1.7.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/94c40dd092e7b9ccf25b08d9e3d4c3f9daddb7c49c3cb9e471a5436d28a5032f",
  "_filesize": 1152626,
  "_sha256": "94c40dd092e7b9ccf25b08d9e3d4c3f9daddb7c49c3cb9e471a5436d28a5032f",
  "_expires": "2026-10-12T17:05:47.000Z",
  "_created": "2026-07-04T01:40:56.000Z",
  "_published": "2026-07-04T17:05:49.138Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 10
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265",
  "_status": "success",
  "_upstream": "https://github.com/bioc/koinar",
  "_commit": {
    "id": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381423
  },
  "_maintainer": {
    "name": "Ludwig Lautenbacher",
    "email": "ludwig.lautenbacher@tum.de",
    "login": "llautenbacher",
    "description": "",
    "uuid": 59884643,
    "orcid": "0000-0002-1540-5911"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85150683002,
      "time": 181,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8077170999"
    },
    {
      "job": 85150683141,
      "time": 164,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8077168873"
    },
    {
      "job": 85150683063,
      "time": 200,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8077173533"
    },
    {
      "job": 85150683072,
      "time": 75,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8077157062"
    },
    {
      "job": 85150683113,
      "time": 73,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8077156842"
    },
    {
      "job": 85150682827,
      "time": 373,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8077144598"
    },
    {
      "job": 85150683102,
      "time": 156,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8077167967"
    },
    {
      "job": 85150683237,
      "time": 73,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8077156703"
    },
    {
      "job": 85150683005,
      "time": 79,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8077157537"
    },
    {
      "job": 85150683056,
      "time": 90,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8077159226"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "BiocManager",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "version": ">= 2.26",
      "role": "Suggests"
    },
    {
      "package": "httptest",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "lattice",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "OrgMassSpecR",
      "role": "Suggests"
    },
    {
      "package": "protViz",
      "role": "Suggests"
    },
    {
      "package": "S4Vectors",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 3
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "massspectrometry",
    "proteomics",
    "infrastructure",
    "software",
    "bioinformatics",
    "deep-learning",
    "machine-learning",
    "mass-spectrometry",
    "python"
  ],
  "_stars": 55,
  "_contributors": [
    {
      "user": "llautenbacher",
      "count": 668,
      "uuid": 59884643
    },
    {
      "user": "wassimg",
      "count": 107,
      "uuid": 6134554
    },
    {
      "user": "jlapin1",
      "count": 43,
      "uuid": 47603871
    },
    {
      "user": "moomboh",
      "count": 34,
      "uuid": 8439442
    },
    {
      "user": "victorgiurcoiu",
      "count": 19,
      "uuid": 74825149
    },
    {
      "user": "tkschmidt",
      "count": 19,
      "uuid": 409660
    },
    {
      "user": "dennisgoldfarb",
      "count": 16,
      "uuid": 8868522
    },
    {
      "user": "jesseangelis",
      "count": 14,
      "uuid": 72972897
    },
    {
      "user": "mostafakalhor",
      "count": 11,
      "uuid": 71625201
    },
    {
      "user": "dulguunb",
      "count": 8,
      "uuid": 22801337
    },
    {
      "user": "arminsl",
      "count": 6,
      "uuid": 50016010
    },
    {
      "user": "erbarb",
      "count": 5,
      "uuid": 93161684
    },
    {
      "user": "rodvrees",
      "count": 4,
      "uuid": 93122887
    },
    {
      "user": "picciama",
      "count": 2,
      "uuid": 50995210
    },
    {
      "user": "robbinbouwmeester",
      "count": 2,
      "uuid": 20045867
    },
    {
      "user": "cpanse",
      "count": 1,
      "uuid": 4901987
    },
    {
      "user": "ralfg",
      "count": 1,
      "uuid": 26458971
    },
    {
      "user": "mshahneh",
      "count": 1,
      "uuid": 56209487
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/wilhelm-lab/koina",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/koinar.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "Koina",
    "predictWithKoinaModel"
  ],
  "_help": [
    {
      "page": "Koina-class",
      "title": "Koina client class",
      "topics": [
        "Koina",
        "Koina-class"
      ]
    },
    {
      "page": "predictWithKoinaModel",
      "title": "Predict Results Using a Koina Model",
      "topics": [
        "predictWithKoinaModel"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/koinar/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "curl",
    "httr",
    "jsonlite",
    "mime",
    "openssl",
    "R6",
    "sys"
  ],
  "_vignettes": [
    {
      "source": "koina.Rmd",
      "filename": "koina.html",
      "title": "Using R client for Koina",
      "author": "Ludwig Lautenbacher, Christian Panse",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Install",
        "Basic usage",
        "Example 1: Reproducing Fig.1d from [@prosit2019]",
        "References",
        "Session information"
      ],
      "created": "2024-04-04 13:17:25",
      "modified": "2026-04-27 09:17:50",
      "commits": 18
    }
  ],
  "_score": 7.1469028699282,
  "_indexed": true,
  "_nocasepkg": "koinar",
  "_universes": [
    "bioc",
    "llautenbacher",
    "wilhelm-lab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-07-04T01:43:40.000Z",
      "distro": "resolute",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/224efdc352f4376eb1358e85d38cd4a89de174f509946ce0aedca7c496f25e09",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-07-04T01:44:15.000Z",
      "distro": "resolute",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/7e726637e5e94ac04275bb04d78979df4b0edebcf01a7da4daf0254c0c15282a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-07-04T01:42:15.000Z",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/591f8a72b5c6652dfcd6fcd839a5c7ad057e45cda50ff5dd8905db29ad9ed4d0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-07-04T01:42:14.000Z",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/c4e5968620efb2bb495c0eb43b229e9795f62475075c15a3d6cba8f593d34b36",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.0",
      "date": "2026-07-04T01:43:47.000Z",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/c8f8c70d4c7963e5b97dfcaf94989c3293a74f0810b9bdba7bf96524c8ac761a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-07-04T01:42:02.000Z",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/ef0aa33e85fa859d93a058be744455487b86197455395ea1a0ff44f1fcb6ef1b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-07-04T01:42:08.000Z",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/f4ef922a69fb55dbbf23757aa464a63c1bc8e79c647fb98abf3f8d14a3311221",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-07-04T01:42:16.000Z",
      "commit": "bc466ac249eab9e50ae5f958ab6fe6e80e38c298",
      "fileid": "https://r2.ropensci.org/2859b7e271a4303d264b71da17e59ee9ab9193e55c6bcbd45436ce779a74c9d2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690917265"
    }
  ]
}