{
  "_id": "6a10c35eacfb0bcc41ccc896",
  "Package": "karyoploteR",
  "Type": "Package",
  "Title": "Plot customizable linear genomes displaying arbitrary data",
  "Version": "1.39.0",
  "Date": "2025-06-20",
  "Authors@R": "c(person(given = \"Bernat\",\nfamily = \"Gel\",\nrole = c(\"aut\", \"cre\"),\nemail = \"bgel@igtp.cat\",\ncomment = c(ORCID = \"0000-0001-8878-349X\")))",
  "Description": "karyoploteR creates karyotype plots of arbitrary genomes\nand offers a complete set of functions to plot arbitrary data\non them. It mimicks many R base graphics functions coupling\nthem with a coordinate change function automatically mapping\nthe chromosome and data coordinates into the plot coordinates.\nIn addition to the provided data plotting functions, it is easy\nto add new ones.",
  "License": "Artistic-2.0",
  "URL": "https://github.com/bernatgel/karyoploteR",
  "BugReports": "https://github.com/bernatgel/karyoploteR/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "Visualization, CopyNumberVariation, Sequencing, Coverage,\nDNASeq, ChIPSeq, MethylSeq, DataImport, OneChannel",
  "NeedsCompilation": "no",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:45:01 UTC",
  "RemoteUrl": "https://github.com/bioc/karyoploteR",
  "RemoteRef": "HEAD",
  "RemoteSha": "3e8c8b101b3178424f9eb729607fd12a0d30d9fd",
  "Packaged": {
    "Date": "2026-04-30 16:34:29 UTC",
    "User": "root"
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  "Author": "Bernat Gel [aut, cre] (ORCID: <https://orcid.org/0000-0001-8878-349X>)",
  "Maintainer": "Bernat Gel <bgel@igtp.cat>",
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    "extra/citation.json",
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  "_homeurl": "https://github.com/bernatgel/karyoploter",
  "_realowner": "bioc",
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  "_exports": [
    "addGeneNames",
    "autotrack",
    "colByCategory",
    "colByChr",
    "colByRegion",
    "colByValue",
    "darker",
    "filterParams",
    "findIntersections",
    "getChromosomeNamesBoundingBox",
    "getColorSchemas",
    "getCytobandColors",
    "getCytobands",
    "getDataPanelBoundingBox",
    "getDefaultPlotParams",
    "getMainTitleBoundingBox",
    "getTextSize",
    "getVariantsColors",
    "horizonColors",
    "is.color",
    "kpAbline",
    "kpAddBaseNumbers",
    "kpAddChromosomeNames",
    "kpAddChromosomeSeparators",
    "kpAddColorRect",
    "kpAddCytobandLabels",
    "kpAddCytobands",
    "kpAddCytobandsAsLine",
    "kpAddLabels",
    "kpAddMainTitle",
    "kpArea",
    "kpArrows",
    "kpAxis",
    "kpBars",
    "kpDataBackground",
    "kpHeatmap",
    "kpLines",
    "kpPlotBAMCoverage",
    "kpPlotBAMDensity",
    "kpPlotBigWig",
    "kpPlotCoverage",
    "kpPlotDensity",
    "kpPlotGenes",
    "kpPlotHorizon",
    "kpPlotLinks",
    "kpPlotLoess",
    "kpPlotManhattan",
    "kpPlotMarkers",
    "kpPlotNames",
    "kpPlotRainfall",
    "kpPlotRegions",
    "kpPlotRibbon",
    "kpPlotTranscripts",
    "kpPoints",
    "kpPolygon",
    "kpRect",
    "kpSegments",
    "kpText",
    "lighter",
    "makeGenesDataFromTxDb",
    "mergeTranscripts",
    "plotDefaultPlotParams",
    "plotKaryotype",
    "plotPalettes",
    "prepareParameters2",
    "prepareParameters4",
    "processClipping",
    "transparent"
  ],
  "_help": [
    {
      "page": "addGeneNames",
      "title": "addGeneNames",
      "topics": [
        "addGeneNames"
      ]
    },
    {
      "page": "autotrack",
      "title": "autotrack",
      "topics": [
        "autotrack"
      ]
    },
    {
      "page": "colByCategory",
      "title": "colByCategory",
      "topics": [
        "colByCategory"
      ]
    },
    {
      "page": "colByChr",
      "title": "colByChr",
      "topics": [
        "colByChr"
      ]
    },
    {
      "page": "colByRegion",
      "title": "colByRegion",
      "topics": [
        "colByRegion"
      ]
    },
    {
      "page": "colByValue",
      "title": "colByValue",
      "topics": [
        "colByValue"
      ]
    },
    {
      "page": "darker",
      "title": "darker",
      "topics": [
        "darker"
      ]
    },
    {
      "page": "filterParams",
      "title": "filterParams",
      "topics": [
        "filterParams"
      ]
    },
    {
      "page": "findIntersections",
      "title": "findIntersections",
      "topics": [
        "findIntersections"
      ]
    },
    {
      "page": "getChromosomeNamesBoundingBox",
      "title": "getChromosomeNamesBoundingBox",
      "topics": [
        "getChromosomeNamesBoundingBox"
      ]
    },
    {
      "page": "getColorSchemas",
      "title": "getColorSchemas",
      "topics": [
        "getColorSchemas"
      ]
    },
    {
      "page": "getCytobandColors",
      "title": "getCytobandColors",
      "topics": [
        "getCytobandColors"
      ]
    },
    {
      "page": "getCytobands",
      "title": "getCytobands",
      "topics": [
        "getCytobands"
      ]
    },
    {
      "page": "getDataPanelBoundingBox",
      "title": "getDataPanelBoundingBox",
      "topics": [
        "getDataPanelBoundingBox"
      ]
    },
    {
      "page": "getDefaultPlotParams",
      "title": "getDefaultParameters",
      "topics": [
        "getDefaultPlotParams"
      ]
    },
    {
      "page": "getMainTitleBoundingBox",
      "title": "getMainTitleBoundingBox",
      "topics": [
        "getMainTitleBoundingBox"
      ]
    },
    {
      "page": "getTextSize",
      "title": "getTextSize",
      "topics": [
        "getTextSize"
      ]
    },
    {
      "page": "getVariantsColors",
      "title": "getVariantsColors",
      "topics": [
        "getVariantsColors"
      ]
    },
    {
      "page": "horizonColors",
      "title": "horizonColors",
      "topics": [
        "horizonColors"
      ]
    },
    {
      "page": "is.color",
      "title": "is.color",
      "topics": [
        "is.color"
      ]
    },
    {
      "page": "kpAbline",
      "title": "kpAbline",
      "topics": [
        "kpAbline"
      ]
    },
    {
      "page": "kpAddBaseNumbers",
      "title": "kpAddBaseNumbers",
      "topics": [
        "kpAddBaseNumbers"
      ]
    },
    {
      "page": "kpAddChromosomeNames",
      "title": "kpAddChromosomeNames",
      "topics": [
        "kpAddChromosomeNames"
      ]
    },
    {
      "page": "kpAddChromosomeSeparators",
      "title": "kpAddChromosomeSeparators",
      "topics": [
        "kpAddChromosomeSeparators"
      ]
    },
    {
      "page": "kpAddColorRect",
      "title": "kpAddColorRect",
      "topics": [
        "kpAddColorRect"
      ]
    },
    {
      "page": "kpAddCytobandLabels",
      "title": "kpAddCytobandLabels",
      "topics": [
        "kpAddCytobandLabels"
      ]
    },
    {
      "page": "kpAddCytobands",
      "title": "kpAddCytobands",
      "topics": [
        "kpAddCytobands"
      ]
    },
    {
      "page": "kpAddCytobandsAsLine",
      "title": "kpAddCytobandsAsLine",
      "topics": [
        "kpAddCytobandsAsLine"
      ]
    },
    {
      "page": "kpAddLabels",
      "title": "kpAddLabels",
      "topics": [
        "kpAddLabels"
      ]
    },
    {
      "page": "kpAddMainTitle",
      "title": "kpAddMainTitle",
      "topics": [
        "kpAddMainTitle"
      ]
    },
    {
      "page": "kpArea",
      "title": "kpArea",
      "topics": [
        "kpArea"
      ]
    },
    {
      "page": "kpArrows",
      "title": "kpArrows",
      "topics": [
        "kpArrows"
      ]
    },
    {
      "page": "kpAxis",
      "title": "kpAxis",
      "topics": [
        "kpAxis"
      ]
    },
    {
      "page": "kpBars",
      "title": "kpBars",
      "topics": [
        "kpBars"
      ]
    },
    {
      "page": "kpDataBackground",
      "title": "kpDataBackground",
      "topics": [
        "kpDataBackground"
      ]
    },
    {
      "page": "kpHeatmap",
      "title": "kpHeatmap",
      "topics": [
        "kpHeatmap"
      ]
    },
    {
      "page": "kpLines",
      "title": "kpLines",
      "topics": [
        "kpLines"
      ]
    },
    {
      "page": "kpPlotBAMCoverage",
      "title": "kpPlotBAMCoverage",
      "topics": [
        "kpPlotBAMCoverage"
      ]
    },
    {
      "page": "kpPlotBAMDensity",
      "title": "kpPlotBAMDensity",
      "topics": [
        "kpPlotBAMDensity"
      ]
    },
    {
      "page": "kpPlotBigWig",
      "title": "kpPlotBigWig",
      "topics": [
        "kpPlotBigWig"
      ]
    },
    {
      "page": "kpPlotCoverage",
      "title": "kpPlotCoverage",
      "topics": [
        "kpPlotCoverage"
      ]
    },
    {
      "page": "kpPlotDensity",
      "title": "kpPlotDensity",
      "topics": [
        "kpPlotDensity"
      ]
    },
    {
      "page": "kpPlotGenes",
      "title": "kpPlotGenes",
      "topics": [
        "kpPlotGenes"
      ]
    },
    {
      "page": "kpPlotHorizon",
      "title": "kpPlotHorizon",
      "topics": [
        "kpPlotHorizon"
      ]
    },
    {
      "page": "kpPlotLinks",
      "title": "kpPlotLinks",
      "topics": [
        "kpPlotLinks"
      ]
    },
    {
      "page": "kpPlotLoess",
      "title": "kpPlotLoess",
      "topics": [
        "kpPlotLoess"
      ]
    },
    {
      "page": "kpPlotManhattan",
      "title": "kpPlotManhattan",
      "topics": [
        "kpPlotManhattan"
      ]
    },
    {
      "page": "kpPlotMarkers",
      "title": "kpPlotMarkers",
      "topics": [
        "kpPlotMarkers"
      ]
    },
    {
      "page": "kpPlotNames",
      "title": "kpPlotNames",
      "topics": [
        "kpPlotNames"
      ]
    },
    {
      "page": "kpPlotRainfall",
      "title": "kpPlotRainfall",
      "topics": [
        "kpPlotRainfall"
      ]
    },
    {
      "page": "kpPlotRegions",
      "title": "kpPlotRegions",
      "topics": [
        "kpPlotRegions"
      ]
    },
    {
      "page": "kpPlotRibbon",
      "title": "kpPlotRibbon",
      "topics": [
        "kpPlotRibbon"
      ]
    },
    {
      "page": "kpPlotTranscripts",
      "title": "kpPlotTranscripts",
      "topics": [
        "kpPlotTranscripts"
      ]
    },
    {
      "page": "kpPoints",
      "title": "kpPoints",
      "topics": [
        "kpPoints"
      ]
    },
    {
      "page": "kpPolygon",
      "title": "kpPolygon",
      "topics": [
        "kpPolygon"
      ]
    },
    {
      "page": "kpRect",
      "title": "kpRect",
      "topics": [
        "kpRect"
      ]
    },
    {
      "page": "kpSegments",
      "title": "kpSegments",
      "topics": [
        "kpSegments"
      ]
    },
    {
      "page": "kpText",
      "title": "kpText",
      "topics": [
        "kpText"
      ]
    },
    {
      "page": "lighter",
      "title": "lighter",
      "topics": [
        "lighter"
      ]
    },
    {
      "page": "makeGenesDataFromTxDb",
      "title": "makeGenesDataFromTxDb",
      "topics": [
        "makeGenesDataFromTxDb"
      ]
    },
    {
      "page": "mergeTranscripts",
      "title": "mergeTranscripts",
      "topics": [
        "mergeTranscripts"
      ]
    },
    {
      "page": "plotDefaultPlotParams",
      "title": "plotDefaultPlotParameters",
      "topics": [
        "plotDefaultPlotParams"
      ]
    },
    {
      "page": "plotKaryotype",
      "title": "plotKaryotype",
      "topics": [
        "plotKaryotype"
      ]
    },
    {
      "page": "plotPalettes",
      "title": "plotPalette",
      "topics": [
        "plotPalettes"
      ]
    },
    {
      "page": "prepareParameters2",
      "title": "prepareParameters2",
      "topics": [
        "prepareParameters2"
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