{ "_id": "6a1ac9721d7bb097a09dcc7c", "Package": "iSEEindex", "Title": "iSEE extension for a landing page to a custom collection of data\nsets", "Version": "1.11.0", "Date": "2024-10-09", "Authors@R": "c(person(\"Kevin\", \"Rue-Albrecht\", email = \"kevinrue67@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3899-3872\")),\nperson(\"Thomas\", \"Sandmann\", email = \"tomsing1@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-6601-8890\")),\nperson(\"Federico\", \"Marini\", email = \"marinif@uni-mainz.de\",\nrole = \"aut\",\ncomment = c(ORCID = '0000-0003-3252-7758')),\nperson(\"Denali Therapeutics\", role = c(\"fnd\")))", "Description": "This package provides an interface to any collection of\ndata sets within a single iSEE web-application. The main\nfunctionality of this package is to define a custom landing\npage allowing app maintainers to list a custom collection of\ndata sets that users can selected from and directly load\nobjects into an iSEE web-application.", "License": "Artistic-2.0", "URL": "https://github.com/iSEE/iSEEindex", "BugReports": "https://support.bioconductor.org/t/iSEEindex", "biocViews": "Software, Infrastructure", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev perl zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:01:06 UTC", "RemoteUrl": "https://github.com/bioc/iSEEindex", "RemoteRef": "HEAD", "RemoteSha": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:49:27 UTC", "User": "root" }, "Author": "Kevin Rue-Albrecht [aut, cre] (ORCID:\n),\nThomas Sandmann [ctb] (ORCID: ),\nFederico Marini [aut] (ORCID: ),\nDenali Therapeutics [fnd]", "Maintainer": "Kevin Rue-Albrecht ", "MD5sum": "39b1357ff573ff05f4f4e30d4c9345b5", "_user": "bioc", "_type": "src", "_file": "iSEEindex_1.11.0.tar.gz", "_fileid": "128d9542badddb97d0a50521acf438ef031f59efcb7ab1a3e01990e3ebb4613d", "_filesize": 690573, "_sha256": "128d9542badddb97d0a50521acf438ef031f59efcb7ab1a3e01990e3ebb4613d", "_created": "2026-05-30T07:49:27.000Z", "_published": "2026-05-30T11:26:42.129Z", "_jobs": [ { "job": 78634627189, "time": 265, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7306629745" }, { "job": 78634627193, "time": 461, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306649575" }, { "job": 78634627190, "time": 391, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306642593" }, { "job": 78634627198, "time": 287, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307833371" }, { "job": 78634627191, "time": 321, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307836395" }, { "job": 78634342207, "time": 365, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306603392" }, { "job": 78634627192, "time": 226, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306626028" }, { "job": 78634627196, "time": 1502, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306751612" }, { "job": 78634627195, "time": 1615, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306762529" }, { "job": 78634627197, "time": 1469, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306748682" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/iSEEindex", "_commit": { "id": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381266 }, "_maintainer": { "name": "Kevin Rue-Albrecht", "email": "kevinrue67@gmail.com", "login": "kevinrue", "mastodon": "@kevinrue@fosstodon.org", "orcid": "0000-0003-3899-3872", "description": "Ingénieur diplômé;\nComputational Biologist; \nSoftware engineer;\nBioconductor contributor", "uuid": 5769108 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "SummarizedExperiment", "role": "Depends" }, { "package": "SingleCellExperiment", "role": "Depends" }, { "package": "BiocFileCache", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "iSEE", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "paws.storage", "role": "Imports" }, { "package": "rintrojs", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "shinydashboard", "role": "Imports" }, { "package": "shinyjs", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "urltools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "RefManageR", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "scRNAseq", "role": "Suggests" }, { "package": "sessioninfo", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "yaml", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.11.0", "bioc": "3.24" }, { "branch": "release", "version": "1.10.0", "bioc": "3.23" } ], "_topics": [ "software", "infrastructure", "bioconductor", "hacktoberfest" ], "_stars": 2, "_contributors": [ { "user": "kevinrue", "count": 43, "uuid": 5769108 }, { "user": "federicomarini", "count": 31, "uuid": 7447478 }, { "user": "jwokaty", "count": 4, "uuid": 1744257 }, { "user": "csoneson", "count": 1, "uuid": 5628952 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 290, "source": "https://www.bioconductor.org/packages/stats/bioc/iSEEindex" }, "_devurl": "https://github.com/isee/iseeindex", "_searchresults": 13, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/iSEEindex.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/isee/iseeindex", "_realowner": "bioc", "_cranurl": false, "_exports": [ "iSEEindex", "iSEEindexHttpsResource", "iSEEindexLocalhostResource", "iSEEindexRcallResource", "iSEEindexRunrResource", "iSEEindexS3Resource", "precache", "show" ], "_help": [ { "page": "iSEEindex", "title": "iSEEindex App", "topics": [ "iSEEindex" ] }, { "page": "iSEEindexHttpsResource-class", "title": "The iSEEindexHttpsResource class", "topics": [ "iSEEindexHttpsResource", "iSEEindexHttpsResource-class", "precache,iSEEindexHttpsResource-method" ] }, { "page": "iSEEindexLocalhostResource-class", "title": "The iSEEindexLocalhostResource class", "topics": [ "iSEEindexLocalhostResource", "iSEEindexLocalhostResource-class", "precache,iSEEindexLocalhostResource-method" ] }, { "page": "iSEEindexRcallResource-class", "title": "The iSEEindexRcallResource class", "topics": [ "iSEEindexRcallResource", "iSEEindexRcallResource-class", "precache,iSEEindexRcallResource-method" ] }, { "page": "iSEEindexResource-class", "title": "The iSEEindexResource class", "topics": [ "iSEEindexResource-class", "precache,iSEEindexResource-method", "show,iSEEindexResource-method" ] }, { "page": "iSEEindexResource-generics", "title": "Generics for iSEEindexResources Objects", "topics": [ "iSEEindexResource-generics", "precache" ] }, { "page": "iSEEindexRunrResource-class", "title": "The iSEEindexRunrResource class", "topics": [ "iSEEindexRunrResource", "iSEEindexRunrResource-class", "precache,iSEEindexRunrResource-method" ] }, { "page": "iSEEindexS3Resource-class", "title": "The iSEEindexS3Resource class", "topics": [ "iSEEindexS3Resource", "iSEEindexS3Resource-class", "precache,iSEEindexS3Resource-method" ] } ], "_readme": "https://github.com/bioc/iSEEindex/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "base64enc", "Biobase", "BiocFileCache", "BiocGenerics", "bit", "bit64", "blob", "bslib", "cachem", "circlize", "cli", "clue", "cluster", "codetools", "colorspace", "colourpicker", "commonmark", "ComplexHeatmap", "cpp11", "crayon", "crosstalk", "curl", "DBI", "dbplyr", "DelayedArray", "digest", "doParallel", "dplyr", "DT", "evaluate", "farver", "fastmap", "filelock", "fontawesome", "foreach", "fs", "generics", "GenomicRanges", "GetoptLong", "ggplot2", "ggrepel", "GlobalOptions", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "httr2", "igraph", "IRanges", "iSEE", "isoband", "iterators", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "listviewer", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mgcv", "mime", "miniUI", "nlme", "openssl", "otel", "paws.common", "paws.storage", "pillar", "pkgconfig", "png", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rintrojs", "rjson", "rlang", "rmarkdown", "RSQLite", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "shape", "shiny", "shinyAce", "shinydashboard", "shinyjs", "shinyWidgets", "SingleCellExperiment", "sourcetools", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "triebeard", "urltools", "utf8", "vctrs", "vipor", "viridisLite", "withr", "xfun", "xml2", "xtable", "XVector", "yaml" ], "_vignettes": [ { "source": "header.Rmd", "filename": "header.html", "title": "Adding a custom header and footer to the landing page", "author": "Kevin Rue-Albrecht", "engine": "knitr::rmarkdown", "headings": [ "Custom header and footer", "Overview", "Implementation", "Example", "Reproducibility", "Bibliography" ], "created": "2023-07-06 19:49:43", "modified": "2023-07-06 19:49:43", "commits": 1 }, { "source": "resources.Rmd", "filename": "resources.html", "title": "Implementing custom iSEEindex resources", "author": "Kevin Rue-Albrecht", "engine": "knitr::rmarkdown", "headings": [ "iSEEindex resources", "Overview", "Implementation", "Built-in resources", "iSEEindexHttpsResource", "Structure", "Caching", "iSEEindexLocalhostResource", "iSEEindexRcallResource", "iSEEindexS3Resource", "iSEEindexRunrResource", "Reproducibility", "Bibliography" ], "created": "2022-11-25 13:41:45", "modified": "2024-10-04 20:16:37", "commits": 6 }, { "source": "iSEEindex.Rmd", "filename": "iSEEindex.html", "title": "Introduction to iSEEindex", "author": "Kevin Rue-Albrecht", "engine": "knitr::rmarkdown", "headings": [ "Basics", "Install iSEEindex", "Required knowledge", "Asking for help", "Citing iSEEindex", "Quick start to using iSEEindex", "Reproducibility", "Bibliography" ], "created": "2022-10-21 14:33:41", "modified": "2023-06-14 08:50:33", "commits": 6 } ], "_score": 5.369215857410143, "_indexed": true, "_nocasepkg": "iseeindex", "_universes": [ "bioc", "kevinrue", "isee" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.11.0", "date": "2026-05-30T07:54:09.000Z", "distro": "noble", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "d245c32a9b36731f890765ed7f6f1a53bfe5e794926acdcef3bb4de173dec4e8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.6.0", "os": "linux", "version": "1.11.0", "date": "2026-05-30T07:53:37.000Z", "distro": "noble", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "a7b97e775bc2157c995db66ce599b7799e2392eba3e35c56eb1318fdfc51bc78", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.5.3", "os": "mac", "version": "1.11.0", "date": "2026-05-30T11:22:54.000Z", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "391d2d72aae9c752eb1466bf084e92bf4600fae16dc2540d93e87589618fb407", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.6.0", "os": "mac", "version": "1.11.0", "date": "2026-05-30T11:23:20.000Z", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "632d5de31bba87a2780e4259e0151ed59c0540ea4c2dd94287c373944a880112", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.6.0", "os": "wasm", "version": "1.11.0", "date": "2026-05-30T07:53:57.000Z", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "ffa4b5309eb6c77016977a7b2d61408c940812d34c55941ffd339eb72e1e1532", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.7.0", "os": "win", "version": "1.11.0", "date": "2026-05-30T08:10:55.000Z", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "bfc6b2ad630b10c73572d2adb0685b60dda0075ffb47e303cd3a57b77a1e0b8e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.5.3", "os": "win", "version": "1.11.0", "date": "2026-05-30T08:13:33.000Z", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "f90f03f010d66cb9499194bec9a1c5b64ce56c789e8f8c0a303c800470a8a5b0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" }, { "r": "4.6.0", "os": "win", "version": "1.11.0", "date": "2026-05-30T08:11:16.000Z", "commit": "ce60d556eac9e7dc6820c025226edce13bbb6d42", "fileid": "542da6f793a7dbfba755dbbc099009c865ce77e3f5a25b9e4f9916f3f7311d71", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678381232" } ] }