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  "Package": "iSEEde",
  "Title": "iSEE extension for panels related to differential expression\nanalysis",
  "Version": "1.11.0",
  "Date": "2024-10-01",
  "Authors@R": "c(person(\"Kevin\", \"Rue-Albrecht\", email = \"kevinrue67@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3899-3872\")),\nperson(\"Thomas\", \"Sandmann\", email = \"tomsing1@gmail.com\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-6601-8890\")),\nperson(\"Denali Therapeutics\", role = c(\"fnd\")))",
  "Description": "This package contains diverse functionality to extend the\nusage of the iSEE package, including additional classes for the\npanels or modes facilitating the analysis of differential\nexpression results. This package does not perform differential\nexpression. Instead, it provides methods to embed precomputed\ndifferential expression results in a SummarizedExperiment\nobject, in a manner that is compatible with interactive\nvisualisation in iSEE applications.",
  "License": "Artistic-2.0",
  "URL": "https://github.com/iSEE/iSEEde",
  "BugReports": "https://support.bioconductor.org/t/iSEEde",
  "biocViews": "Software, Infrastructure, DifferentialExpression",
  "Encoding": "UTF-8",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:01:20 UTC",
  "RemoteUrl": "https://github.com/bioc/iSEEde",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 13:52:57 UTC",
    "User": "root"
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  "Author": "Kevin Rue-Albrecht [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3899-3872>),\nThomas Sandmann [ctb] (ORCID: <https://orcid.org/0000-0002-6601-8890>),\nDenali Therapeutics [fnd]",
  "Maintainer": "Kevin Rue-Albrecht <kevinrue67@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "iSEEde_1.11.0.tar.gz",
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  "_expires": "2027-02-09T16:23:55.000Z",
  "_created": "2026-11-01T13:52:57.000Z",
  "_published": "2026-11-01T16:23:57.168Z",
  "_upstream": "https://github.com/bioc/iSEEde",
  "_status": "success",
  "_maintainer": {
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    "orcid": "0000-0003-3899-3872",
    "description": "Ingénieur diplômé;\nComputational Biologist; \nSoftware engineer;\nBioconductor contributor",
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    "source": "https://www.bioconductor.org/packages/stats/bioc/iSEEde"
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    "initialize",
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    "iSEEedgeRResults",
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      "title": "Generics for Differential Expression Results",
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        "log2FoldChange",
        "pValue"
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        ".defineDataInterface,DETable-method",
        ".fullName,DETable-method",
        ".generateTable,DETable-method",
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        "embedContrastResults,iSEEDESeq2Results-method",
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        "log2FoldChange,iSEEDESeq2Results-method",
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        "embedContrastResults,iSEEedgeRResults-method",
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        "iSEEedgeRResults-class",
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        "pValue,iSEEedgeRResults-method",
        "showAsCell,iSEEedgeRResults-method"
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        "embedContrastResults,iSEELimmaResults-method",
        "iSEELimmaResults",
        "iSEELimmaResults-class",
        "log2FoldChange,iSEELimmaResults-method",
        "pValue,iSEELimmaResults-method",
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        ".createObservers,LogFCLogFCPlot-method",
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      "filename": "iSEEde.html",
      "title": "Introduction to iSEEde",
      "author": "Kevin Rue-Albrecht",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Basics",
        "Install iSEEde",
        "Required knowledge",
        "Asking for help",
        "Citing iSEEde",
        "Quick start to using to iSEEde",
        "Reproducibility",
        "Bibliography"
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      "created": "2022-12-02 14:07:05",
      "modified": "2023-04-12 16:56:51",
      "commits": 9
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      "filename": "rounding.html",
      "title": "Rounding numeric values",
      "author": "Kevin Rue-Albrecht",
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      "headings": [
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      "created": "2023-04-12 16:56:51",
      "modified": "2023-05-18 11:23:58",
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      "title": "Supported differential expression methods",
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