{
  "_id": "6aca19b8fe5cc25786e84aed",
  "Package": "homosapienDEE2CellScore",
  "Title": "Example Data Package for CellScore",
  "Version": "1.9.0",
  "Authors@R": "person(\"Justin\", \"Marsh\", email = \"j.marsh@auckland.ac.nz\", role = c(\"aut\", \"cre\"))",
  "Description": "This is a data package for normalised homosapien data\ndownloaded from DEE2. The package both downloads, normalises,\nand filters the data, and provides a way to access the data\nfrom a canonical store without needing local processing. This\npackage was built as a way to generate and store canonical test\ndata for CellScore.",
  "License": "GPL (>= 3)",
  "biocViews": "RNASeqData, Genome, ExperimentHub, ExpressionData",
  "BugReports": "https://github.com/flaviusb/homosapienDEE2CellScore/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:37:33 UTC",
  "RemoteUrl": "https://github.com/bioc/homosapienDEE2CellScore",
  "RemoteRef": "HEAD",
  "RemoteSha": "38461f61c77a35d5f567f1ffccab42654ec43746",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 10:45:52 UTC",
    "User": "root"
  },
  "Author": "Justin Marsh [aut, cre]",
  "Maintainer": "Justin Marsh <j.marsh@auckland.ac.nz>",
  "_user": "bioc",
  "_type": "src",
  "_file": "homosapienDEE2CellScore_1.9.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/b411faaf5b708fbcebc8d144d73524d8f0bf92ea83c2c75c1c29e7b0bce3a91e",
  "_filesize": 367100,
  "_sha256": "b411faaf5b708fbcebc8d144d73524d8f0bf92ea83c2c75c1c29e7b0bce3a91e",
  "_expires": "2027-01-18T10:55:50.000Z",
  "_created": "2026-10-10T10:45:52.000Z",
  "_published": "2026-10-10T10:55:52.690Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045781094",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 12
  },
  "_upstream": "https://github.com/bioc/homosapienDEE2CellScore",
  "_commit": {
    "id": "38461f61c77a35d5f567f1ffccab42654ec43746",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379853
  },
  "_maintainer": {
    "name": "Justin Marsh",
    "email": "j.marsh@auckland.ac.nz",
    "login": "flaviusb",
    "twitter": "@flaviusb",
    "description": "Language developer, tool maker, apparently has green blood.",
    "uuid": 64478
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114195781418,
      "time": 195,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11666539988"
    },
    {
      "job": 114195781413,
      "time": 533,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
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    },
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      "config": "linux-release-x86_64",
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    },
    {
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      "time": 286,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11667559280"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rtsne",
      "version": ">= 0.15",
      "role": "Imports"
    },
    {
      "package": "utils",
      "version": ">= 3.5.0",
      "role": "Imports"
    },
    {
      "package": "ExperimentHub",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "DESeq2",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "getDEE2",
      "role": "Imports"
    },
    {
      "package": "MatrixGenerics",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "Biobase",
      "version": ">= 2.39.1",
      "role": "Suggests"
    },
    {
      "package": "BiocManager",
      "role": "Suggests"
    },
    {
      "package": "AnnotationHubData",
      "role": "Suggests"
    },
    {
      "package": "ExperimentHubData",
      "role": "Suggests"
    },
    {
      "package": "AnnotationHub",
      "role": "Suggests"
    },
    {
      "package": "CellScore",
      "version": ">= 1.21.4",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.9.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.8.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "rnaseqdata",
    "genome",
    "experimenthub",
    "expressiondata",
    "datapkg"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "flaviusb",
      "count": 162,
      "uuid": 64478
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/flaviusb/homosapiendee2cellscore",
  "_searchresults": 3,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/homosapienDEE2CellScore.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_exports": [
    "buildData",
    "buildRaw",
    "cols",
    "downloadAllTheData",
    "HomosapienDEE2_QC_PASS_Agg",
    "HomosapienDEE2_QC_PASS_Deseq2",
    "HomosapienDEE2_QC_PASS_Rank",
    "HomosapienDEE2_QC_PASS_Raw",
    "HomosapienDEE2_QC_WARN_Agg",
    "HomosapienDEE2_QC_WARN_Deseq2",
    "HomosapienDEE2_QC_WARN_Rank",
    "HomosapienDEE2_QC_WARN_Raw",
    "readInSEFolder",
    "readInSEZip",
    "srx_agg_se",
    "writeOutSEZip"
  ],
  "_help": [
    {
      "page": "buildData",
      "title": "buildData builds the data included in this package",
      "topics": [
        "buildData"
      ]
    },
    {
      "page": "buildRaw",
      "title": "buildRaw gets the raw data in SummarizedExperiment format",
      "topics": [
        "buildRaw"
      ]
    },
    {
      "page": "cols",
      "title": "hsapiens column data we are targetting",
      "topics": [
        "cols"
      ]
    },
    {
      "page": "downloadAllTheData",
      "title": "downloadAllTheData in SummarizedExperiment format",
      "topics": [
        "downloadAllTheData"
      ]
    },
    {
      "page": "HomosapienDEE2_QC_WARN_Raw",
      "title": "Automatically created ergonomic accessor functions",
      "topics": [
        "HomosapienDEE2_QC_PASS_Agg",
        "HomosapienDEE2_QC_PASS_Deseq2",
        "HomosapienDEE2_QC_PASS_Rank",
        "HomosapienDEE2_QC_PASS_Raw",
        "HomosapienDEE2_QC_WARN_Agg",
        "HomosapienDEE2_QC_WARN_Deseq2",
        "HomosapienDEE2_QC_WARN_Rank",
        "HomosapienDEE2_QC_WARN_Raw"
      ]
    },
    {
      "page": "readInSEFolder",
      "title": "readInSEFolder read a SummarizedExperiment in from a folder",
      "topics": [
        "readInSEFolder"
      ]
    },
    {
      "page": "readInSEZip",
      "title": "readInSEZip read a SummarizedExperiment in from a zip file",
      "topics": [
        "readInSEZip"
      ]
    },
    {
      "page": "srx_agg_se",
      "title": "srx_agg_se is a version of srx_agg that works on SummarizedExperiments",
      "topics": [
        "srx_agg_se"
      ]
    },
    {
      "page": "writeOutSEZip",
      "title": "writeOutSEZip writes out a SummarizedExperiment into a zip file",
      "topics": [
        "writeOutSEZip"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/homosapienDEE2CellScore/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocParallel",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "DESeq2",
    "dplyr",
    "ExperimentHub",
    "farver",
    "fastmap",
    "filelock",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "getDEE2",
    "ggplot2",
    "glue",
    "gtable",
    "htm2txt",
    "httr",
    "httr2",
    "IRanges",
    "isoband",
    "jsonlite",
    "KEGGREST",
    "labeling",
    "lambda.r",
    "lattice",
    "lifecycle",
    "locfit",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "RSQLite",
    "Rtsne",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "snow",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "XVector",
    "yaml"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "homosapiendee2cellscore",
  "_universes": [
    "bioc",
    "flaviusb"
  ],
  "_binaries": [
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}