{ "_id": "6adb1d8a55731c523ae762d8", "Package": "hierGWAS", "Title": "Asessing statistical significance in predictive GWA studies", "Version": "1.43.0", "Author": "Laura Buzdugan", "Maintainer": "Laura Buzdugan ", "Description": "Testing individual SNPs, as well as arbitrarily large\ngroups of SNPs in GWA studies, using a joint model of all SNPs.\nThe method controls the FWER, and provides an automatic,\ndata-driven refinement of the SNP clusters to smaller groups or\nsingle markers.", "License": "GPL-3", "LazyData": "true", "biocViews": "SNP, LinkageDisequilibrium, Clustering", "Collate": "'cluster.snp.R' 'lasso.select.R' 'multisplit.R' 'MEL.R'\n'test.snp.R' 'adj.pval.R' 'comp.cluster.pval.R'\n'iterative.DFS.R' 'test.hierarchy.R' 'return.r2.R'\n'compute.r2.R'", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:41:24 UTC", "RemoteUrl": "https://github.com/bioc/hierGWAS", "RemoteRef": "HEAD", "RemoteSha": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-23 08:36:11 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "hierGWAS_1.43.0.tar.gz", "_fileid": "https://r2.ropensci.org/367438332182e705a34fbbed765eb1e5322970332fbb888ef0ab48640513a9d3", "_filesize": 543675, "_sha256": "367438332182e705a34fbbed765eb1e5322970332fbb888ef0ab48640513a9d3", "_expires": "2027-01-31T08:40:40.000Z", "_created": "2026-10-23T08:36:11.000Z", "_published": "2026-10-23T08:40:42.090Z", "_upstream": "https://github.com/bioc/hierGWAS", "_status": "success", "_maintainer": { "name": "Laura Buzdugan", "email": "buzdugan@stat.math.ethz.ch" }, "_jobs": [ { "job": 120321904813, "time": 135, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "12489266736" }, { "job": 120321904714, "time": 171, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12489940478" }, { "job": 120321904729, "time": 231, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12488923225" }, { "job": 120321904785, "time": 129, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "12489641148" }, { "job": 120321904756, "time": 107, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12489780722" }, { "job": 120318413813, "time": 528, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12488369186" }, { "job": 120321904579, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12489122859" }, { "job": 120321904680, "time": 77, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12488224537" }, { "job": 120321904788, "time": 85, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "12489675840" }, { "job": 120321904634, "time": 96, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12489766154" } ], "_bioccheck": { "error": 1, "warning": 2, "note": 10 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712", "_commit": { "id": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380084 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2.0", "role": "Depends" }, { "package": "fastcluster", "role": "Imports" }, { "package": "glmnet", "role": "Imports" }, { "package": "fmsb", "role": "Imports" }, { "package": "BiocGenerics", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.43.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.42.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "snp", "linkagedisequilibrium", "clustering" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 479, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 530, "source": "https://www.bioconductor.org/packages/stats/bioc/hierGWAS" }, "_searchresults": 3, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/hierGWAS.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "cluster.snp", "compute.r2", "multisplit", "test.hierarchy" ], "_datasets": [ { "name": "simGWAS", "title": "Simulated GWAS data", "object": "simGWAS", "class": [ "data.frame" ], "fields": [], "rows": 500, "table": true, "tojson": true } ], "_help": [ { "page": "cluster.snp", "title": "Hierarchical Clustering of SNP Data", "topics": [ "cluster.snp" ] }, { "page": "compute.r2", "title": "R2 computation", "topics": [ "compute.r2" ] }, { "page": "hierGWAS", "title": "Asessing statistical significance in predictive GWA studies", "topics": [ "hierGWAS-package", "hierGWAS" ] }, { "page": "multisplit", "title": "Variable Selection on Random Sample Splits.", "topics": [ "multisplit" ] }, { "page": "simGWAS", "title": "Simulated GWAS data", "topics": [ "simGWAS" ] }, { "page": "test.hierarchy", "title": "Hierarchical Testing of SNPs", "topics": [ "test.hierarchy" ] } ], "_rundeps": [ "codetools", "fastcluster", "fmsb", "foreach", "glmnet", "iterators", "lattice", "Matrix", "Rcpp", "RcppEigen", "shape", "survival" ], "_vignettes": [ { "source": "hierGWAS.Rnw", "filename": "hierGWAS.pdf", "title": "User manual for R-Package hierGWAS", "engine": "utils::Sweave", "headings": [], "created": "2015-06-08 18:03:39", "modified": "2015-06-08 18:03:39", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "hiergwas", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.43.0", "date": "2026-10-23T08:38:51.000Z", "distro": "resolute", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/e519aed94384ac487fb9e3a70ca8ddb700c41be931b00192f896063bd3fdb2df", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.6.1", "os": "linux", "version": "1.43.0", "date": "2026-10-23T08:39:49.000Z", "distro": "resolute", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/2d4f96f5c1c3314c4abc4f4891357aeaed268e88940592799e1e6cdb1a79b001", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.5.3", "os": "mac", "version": "1.43.0", "date": "2026-10-23T08:38:09.000Z", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/3c454ca63a90068fc76788334972894d08aad9e04d80ff0b9ee8699bb480f24d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.6.1", "os": "mac", "version": "1.43.0", "date": "2026-10-23T08:37:45.000Z", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/ba0ade0e484ba8aa42e0a7e8c01473bbfffa369be3bf52b2cfaa60e9cc16fc6d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.6.0", "os": "wasm", "version": "1.43.0", "date": "2026-10-23T08:38:10.000Z", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/2af29a3391f09d3c8e008ff8e523d7d282db4a5e3222d5a2586ecf5a6386a5ef", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.7.0", "os": "win", "version": "1.43.0", "date": "2026-10-23T08:37:15.000Z", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/afb3cc17c01239561aed488a2deb5a17a8f804ad4c02e5e78101c1259826f22b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.5.3", "os": "win", "version": "1.43.0", "date": "2026-10-23T08:37:18.000Z", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/ac4aeac77699f7ff242378f9db35a593b66c8fd499edf12730bd00b9e463c90e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" }, { "r": "4.6.1", "os": "win", "version": "1.43.0", "date": "2026-10-23T08:37:27.000Z", "commit": "ff417c38bc2c855f4e323e88013dfe8166ea529c", "fileid": "https://r2.ropensci.org/0aa62dc5a88afb50d9a66f56e8bc9103f9a0f97dacd2d3b0b00a30a5e48ee9e1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39924751712" } ] }