{ "_id": "6a1acb261d7bb097a09dddb9", "Package": "hapFabia", "Title": "hapFabia: Identification of very short segments of identity by\ndescent (IBD) characterized by rare variants in large\nsequencing data", "Version": "1.55.0", "Date": "2017-03-11", "Author": "Sepp Hochreiter ", "Maintainer": "Andreas Mitterecker ", "Description": "A package to identify very short IBD segments in large\nsequencing data by FABIA biclustering. Two haplotypes are\nidentical by descent (IBD) if they share a segment that both\ninherited from a common ancestor. Current IBD methods reliably\ndetect long IBD segments because many minor alleles in the\nsegment are concordant between the two haplotypes. However,\nmany cohort studies contain unrelated individuals which share\nonly short IBD segments. This package provides software to\nidentify short IBD segments in sequencing data. Knowledge of\nshort IBD segments are relevant for phasing of genotyping data,\nassociation studies, and for population genetics, where they\nshed light on the evolutionary history of humans. The package\nsupports VCF formats, is based on sparse matrix operations, and\nprovides visualization of haplotype clusters in different\nformats.", "License": "LGPL (>= 2.1)", "Collate": "AllClasses.R AllGenerics.R hapFabia.R\nmethods-Factorization-class.R methods-IBDsegment-class.R\nmethods-IBDsegmentList-class.R zzz.R", "URL": "http://www.bioinf.jku.at/software/hapFabia/hapFabia.html", "biocViews": "Genetics, GeneticVariability, SNP, Sequencing, Sequencing,\nVisualization, Clustering, SequenceMatching, Software", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:36:51 UTC", "RemoteUrl": "https://github.com/bioc/hapFabia", "RemoteRef": "HEAD", "RemoteSha": "067e34d1b2bcc746035b3ab5bbc3f9807c30f24a", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-30 08:00:55 UTC", "User": "root" }, "MD5sum": "3cd538b06081b52bcdffcae179b69808", "_user": "bioc", "_type": "src", "_file": "hapFabia_1.55.0.tar.gz", "_fileid": 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