{
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  "Date": "2025-07-22",
  "Type": "Package",
  "Title": "Operations on genomic intervals",
  "Author": "Julien Gagneur <gagneur@in.tum.de>, Joern Toedling, Richard\nBourgon, Nicolas Delhomme",
  "Maintainer": "Julien Gagneur <gagneur@in.tum.de>",
  "Description": "This package defines classes for representing genomic\nintervals and provides functions and methods for working with\nthese. Note: The package provides the basic infrastructure for\nand is enhanced by the package 'girafe'.",
  "License": "Artistic-2.0",
  "Collate": "AllGenerics.R Genome_intervals-class.R\nGenome_intervals-coercion-methods.R Genome_intervals-package.R\nGenome_intervals-ordering.R show-methods.R size-methods.R c.R\ncore_annotated.R distance_to_nearest-methods.R\ninterval_complement-methods.R interval_overlap-methods.R\ninterval_intersection-methods.R interval_union-methods.R\nwhich_nearest-methods.R parseGffAttributes.R readGff3.R\nwriteGff3.R",
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        "genomeIntervals"
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        "c,Genome_intervals_stranded-method"
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      "title": "Distance in bases to the closest interval(s)",
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        "seq_name",
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        "Genome_intervals_stranded-class",
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        "[[<-,Genome_intervals,ANY-method",
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      "topics": [
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        "order",
        "order,Genome_intervals-method",
        "order,Genome_intervals_stranded-method",
        "rank",
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      "topics": [
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      "topics": [
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        "as,Genome_intervals-method",
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        "coerce,Genome_intervals,GRangesList-method",
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    {
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