{
  "_id": "6ab8f31199f7aa8c6aa38cf9",
  "Package": "gDRstyle",
  "Type": "Package",
  "Title": "A package with style requirements for the gDR suite",
  "Version": "1.11.6",
  "Date": "2026-07-22",
  "Authors@R": "c(\nperson(\"Allison\", \"Vuong\", role=c(\"aut\")),\nperson(\"Dariusz\", \"Scigocki\", role=c(\"aut\")),\nperson(\"Marcin\", \"Kamianowski\", role=c(\"aut\")),\nperson(\"Aleksander\", \"Chlebowski\", role=c(\"ctb\")),\nperson(\"Janina\", \"Smola\", role=\"aut\"),\nperson(\"Arkadiusz\", \"Gladki\", role=c(\"cre\", \"aut\"), email=\"gladki.arkadiusz@gmail.com\",\ncomment = c(ORCID = \"0000-0002-7059-6378\")),\nperson(\"Bartosz\", \"Czech\", role=c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-9908-3007\")))",
  "Description": "Package fills a helper package role for whole gDR suite.\nIt helps to support good development practices by keeping style\nrequirements and style tests for other packages. It also\ncontains build helpers to make all package requirements met.",
  "License": "Artistic-2.0",
  "LazyLoad": "yes",
  "URL": "https://github.com/gdrplatform/gDRstyle,\nhttps://gdrplatform.github.io/gDRstyle/",
  "BugReports": "https://github.com/gdrplatform/gDRstyle/issues",
  "biocViews": "Software, Infrastructure",
  "VignetteBuilder": "knitr",
  "ByteCompile": "TRUE",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "cmake git make libgit2-dev libicu-dev libssh2-1-dev\nlibuv1-dev libxml2-dev libssl-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-07-29 09:06:39 UTC",
  "RemoteUrl": "https://github.com/bioc/gDRstyle",
  "RemoteRef": "HEAD",
  "RemoteSha": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-27 10:37:04 UTC",
    "User": "root"
  },
  "Author": "Allison Vuong [aut],\nDariusz Scigocki [aut],\nMarcin Kamianowski [aut],\nAleksander Chlebowski [ctb],\nJanina Smola [aut],\nArkadiusz Gladki [cre, aut] (ORCID:\n<https://orcid.org/0000-0002-7059-6378>),\nBartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>)",
  "Maintainer": "Arkadiusz Gladki <gladki.arkadiusz@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "gDRstyle_1.11.6.tar.gz",
  "_fileid": "https://r2.ropensci.org/24ede294179df74db0a98f06073085f97963ba3cd744fa7452bd5efa7bd3c1cd",
  "_filesize": 154227,
  "_sha256": "24ede294179df74db0a98f06073085f97963ba3cd744fa7452bd5efa7bd3c1cd",
  "_expires": "2027-01-05T10:42:23.000Z",
  "_created": "2026-09-27T10:37:04.000Z",
  "_published": "2026-09-27T10:42:25.574Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 11
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101",
  "_status": "success",
  "_upstream": "https://github.com/bioc/gDRstyle",
  "_commit": {
    "id": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
    "author": "Arek Gladki <41166437+gladkia@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #101 from gdrplatform/GDR-3471\n\nfeat: add lintRmdDeps() — static check for unresolved Rmd function calls (GDR-3471)",
    "time": 1785315999
  },
  "_maintainer": {
    "name": "Arkadiusz Gladki",
    "email": "gladki.arkadiusz@gmail.com",
    "login": "gladkia",
    "linkedin": "in/arkadiusz-gladki-55b94735",
    "orcid": "0000-0002-7059-6378",
    "twitter": "@biosmooth",
    "description": "",
    "uuid": 41166437
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 108602726219,
      "time": 164,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10929761960"
    },
    {
      "job": 108602726204,
      "time": 283,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10929722336"
    },
    {
      "job": 108602726151,
      "time": 279,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10929189066"
    },
    {
      "job": 108602726188,
      "time": 139,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10928954435"
    },
    {
      "job": 108602726206,
      "time": 115,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10928659788"
    },
    {
      "job": 108602269752,
      "time": 181,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10930070360"
    },
    {
      "job": 108602726134,
      "time": 141,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10929613072"
    },
    {
      "job": 108602726200,
      "time": 131,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10928904223"
    },
    {
      "job": 108602726218,
      "time": 138,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10930030811"
    },
    {
      "job": 108602726213,
      "time": 125,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10929821382"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2",
      "role": "Depends"
    },
    {
      "package": "BiocCheck",
      "role": "Imports"
    },
    {
      "package": "BiocManager",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Imports"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "desc",
      "role": "Imports"
    },
    {
      "package": "git2r",
      "role": "Imports"
    },
    {
      "package": "lintr",
      "version": ">= 3.2.0",
      "role": "Imports"
    },
    {
      "package": "rcmdcheck",
      "role": "Imports"
    },
    {
      "package": "remotes",
      "role": "Imports"
    },
    {
      "package": "yaml",
      "role": "Imports"
    },
    {
      "package": "rjson",
      "role": "Imports"
    },
    {
      "package": "pkgbuild",
      "role": "Imports"
    },
    {
      "package": "withr",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pkgdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 1
    },
    {
      "week": "2026-19",
      "n": 1
    },
    {
      "week": "2026-22",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 1
    },
    {
      "week": "2026-25",
      "n": 1
    },
    {
      "week": "2026-31",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.11.6",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.10.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "infrastructure"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "gladkia",
      "count": 159,
      "uuid": 41166437
    },
    {
      "user": "bczech",
      "count": 108,
      "uuid": 32614650
    },
    {
      "user": "allisonvuong",
      "count": 72,
      "uuid": 47435771
    },
    {
      "user": "darsoo",
      "count": 57,
      "uuid": 28986516
    },
    {
      "user": "gdr-tech",
      "count": 35,
      "uuid": 253898595
    },
    {
      "user": "marcin-kam",
      "count": 33,
      "uuid": 20190698
    },
    {
      "user": "tazovsky",
      "count": 27,
      "uuid": 29068994
    },
    {
      "user": "j-smola",
      "count": 24,
      "uuid": 31825957
    },
    {
      "user": "jwokaty",
      "count": 12,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 468,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 318,
    "source": "https://www.bioconductor.org/packages/stats/bioc/gDRstyle"
  },
  "_devurl": "https://github.com/gdrplatform/gdrstyle",
  "_pkgdown": "https://gdrplatform.github.io/gDRstyle/",
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/gDRstyle.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/gdrplatform/gdrstyle",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "avoid_new_lines",
    "checkDependencies",
    "checkPackage",
    "installAllDeps",
    "installLocalPackage",
    "lintNewsEntries",
    "lintPkgDirs",
    "lintRmdDeps",
    "roxygen_tag_linter"
  ],
  "_help": [
    {
      "page": "avoid_new_lines",
      "title": "Avoid new lines in sprintf output. Function helps to avoid line lenght limits without affecting sprintf output",
      "topics": [
        "avoid_new_lines"
      ]
    },
    {
      "page": "checkDependencies",
      "title": "Check for alignment of package dependencies across Rplatform and package specifications.",
      "topics": [
        "checkDependencies"
      ]
    },
    {
      "page": "checkPackage",
      "title": "Check R package",
      "topics": [
        "checkPackage"
      ]
    },
    {
      "page": "installAllDeps",
      "title": "Install all package dependencies from yaml file for building image purposes",
      "topics": [
        "installAllDeps"
      ]
    },
    {
      "page": "installLocalPackage",
      "title": "Install locally cloned repo for builiding image purposes",
      "topics": [
        "installLocalPackage"
      ]
    },
    {
      "page": "lintNewsEntries",
      "title": "Lint NEWS.md entries for style and brevity",
      "topics": [
        "lintNewsEntries"
      ]
    },
    {
      "page": "lintPkgDirs",
      "title": "Lint select subdirectories in a package directory.",
      "topics": [
        "lintPkgDirs"
      ]
    },
    {
      "page": "lintRmdDeps",
      "title": "Check an Rmd file for unresolved function calls",
      "topics": [
        "lintRmdDeps"
      ]
    },
    {
      "page": "roxygen_tag_linter",
      "title": "roxygen_tag_linter",
      "topics": [
        "roxygen_tag_linter"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/gDRstyle/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocCheck",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocStyle",
    "biocViews",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "bookdown",
    "bslib",
    "cachem",
    "callr",
    "checkmate",
    "cli",
    "codetools",
    "commonmark",
    "cpp11",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "desc",
    "digest",
    "dplyr",
    "evaluate",
    "fastmap",
    "filelock",
    "fontawesome",
    "fs",
    "generics",
    "git2r",
    "glue",
    "graph",
    "highr",
    "htmltools",
    "httr",
    "httr2",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lifecycle",
    "lintr",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "otel",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "prettyunits",
    "processx",
    "ps",
    "purrr",
    "R6",
    "rappdirs",
    "RBGL",
    "rcmdcheck",
    "RCurl",
    "remotes",
    "rex",
    "rjson",
    "rlang",
    "rmarkdown",
    "rprojroot",
    "RSQLite",
    "RUnit",
    "rvest",
    "sass",
    "selectr",
    "sessioninfo",
    "stringdist",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "withr",
    "xfun",
    "XML",
    "xml2",
    "xmlparsedata",
    "xopen",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "style_guide.Rmd",
      "filename": "style_guide.html",
      "title": "gDR style guide",
      "author": "gDR team",
      "engine": "knitr::rmarkdown",
      "headings": [
        "gDR style guide",
        "General R code",
        "General Shiny code",
        "General package code",
        "Git best practices",
        "SessionInfo"
      ],
      "created": "2024-02-13 15:14:06",
      "modified": "2026-05-28 16:44:26",
      "commits": 2
    },
    {
      "source": "gDRstyle.Rmd",
      "filename": "gDRstyle.html",
      "title": "Using gDRstyle",
      "author": "gDR team",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Use Cases",
        "Style guide",
        "CI/CD",
        "Package installation",
        "SessionInfo"
      ],
      "created": "2023-03-24 05:01:55",
      "modified": "2026-05-28 16:44:26",
      "commits": 4
    }
  ],
  "_score": 6.225309281725863,
  "_indexed": true,
  "_nocasepkg": "gdrstyle",
  "_universes": [
    "bioc",
    "gladkia",
    "gdrplatform"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.11.6",
      "date": "2026-09-27T10:41:19.000Z",
      "distro": "resolute",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/132bd4e954dc7491f4cdfd168769aaf20412eb9476b2b3241d1dabaf9898172e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.11.6",
      "date": "2026-09-27T10:41:11.000Z",
      "distro": "resolute",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/c6ff644673c126a66baacd8db526446d40bbeb67034152b2cbd42a61894339f3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.11.6",
      "date": "2026-09-27T10:38:58.000Z",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/5dd93fced3b3edc5a7c4a19ca73a3137d761265991ef44d1e59d16233566c898",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.11.6",
      "date": "2026-09-27T10:38:38.000Z",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/7d98813ee2c71236b17835d8ef74f0224bbb924dc57f1c9f8c6e533d14c0775f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.11.6",
      "date": "2026-09-27T10:39:36.000Z",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/6110f6464041a058d562056b8baca12af11b05d4d2ed3835c1c663b52a476ee1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.11.6",
      "date": "2026-09-27T10:38:31.000Z",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/d519cbc856ba4a0eb967f53b38cf52d0d3109e85d082ad71361b60e183262eaa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.11.6",
      "date": "2026-09-27T10:39:17.000Z",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/af0273b35c509accb7d648460125192b8349872bd59ca36a613c55e98e802d04",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.11.6",
      "date": "2026-09-27T10:38:25.000Z",
      "commit": "984a92bb85c1bb08dc2c32c189b0f3bdd771fd70",
      "fileid": "https://r2.ropensci.org/83f3469963152434acf177479c1b9dc8f0985788a2bc292cbc0d003d7a6cc377",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36312937101"
    }
  ]
}