{ "_id": "6a1ad0851d7bb097a09e1776", "Package": "flowCyBar", "Encoding": "UTF-8", "Type": "Package", "Title": "Analyze flow cytometric data using gate information", "Version": "1.49.0", "Date": "2015-03-05", "Author": "Joachim Schumann , Christin Koch\n, Susanne Günther\n, Ingo Fetzer\n, Susann Müller\n", "Maintainer": "Joachim Schumann ", "Description": "A package to analyze flow cytometric data using gate\ninformation to follow population/community dynamics", "License": "GPL-2", "URL": "http://www.ufz.de/index.php?de=16773", "biocViews": "ImmunoOncology, CellBasedAssays, Clustering, FlowCytometry,\nSoftware, Visualization", "Packaged": { "Date": "2026-05-30 08:25:47 UTC", "User": "root" }, "Collate": "AllGenerics.R normalize.R cybar_plot.R nmds.R correlation.R", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:38:56 UTC", "RemoteUrl": "https://github.com/bioc/flowCyBar", "RemoteRef": "HEAD", "RemoteSha": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "NeedsCompilation": "no", "MD5sum": "d2e8105c69bb3574509b25d1be976e13", "_user": "bioc", "_type": "src", "_file": "flowCyBar_1.49.0.tar.gz", "_fileid": "907db598c9203d0491165110f01af70431a29cd511493b1a3afac90c78e84bb2", "_filesize": 451535, "_sha256": "907db598c9203d0491165110f01af70431a29cd511493b1a3afac90c78e84bb2", "_created": "2026-05-30T08:25:47.000Z", "_published": "2026-05-30T11:56:53.700Z", "_jobs": [ { "job": 78636474633, "time": 137, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306828047" }, { "job": 78636474643, "time": 146, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306829022" }, { "job": 78636474629, "time": 210, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306834937" }, { "job": 78636474657, "time": 84, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307993555" }, { "job": 78636474655, "time": 104, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307995154" }, { "job": 78636325446, "time": 179, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306814491" }, { "job": 78636474632, "time": 103, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306824941" }, { "job": 78636474654, "time": 80, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306822548" }, { "job": 78636474652, "time": 92, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306823779" }, { "job": 78636474659, "time": 80, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306822615" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 10 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/flowCyBar", "_commit": { "id": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379936 }, "_maintainer": { "name": "Joachim Schumann", "email": "joachim.schumann@ufz.de", "login": "schumanjufz", "description": "", "uuid": 6998768 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "gplots", "role": "Imports" }, { "package": "vegan", "role": "Imports" }, { "package": "methods", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23" } ], "_topics": [ "immunooncology", "cellbasedassays", "clustering", "flowcytometry", "software", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 343, "source": "https://www.bioconductor.org/packages/stats/bioc/flowCyBar" }, "_mentions": 7, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/flowCyBar.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "correlation", "cybar_plot", "nmds", "normalize" ], "_datasets": [ { "name": "Abiotic_data_sample", "title": "Dataset with abiotic data and sample names", "object": "Abiotic_data_sample", "file": "Abiotic_data_sample.txt.gz", "class": [ "data.frame" ], "fields": [ "sample", "G1", "G2", "G3", "G4", "G5", "G6", "G7", "G8", "G9", "G10", "G11", "G12", "G13", "G14", "G15", "G16", "G17", "G18", "G19", "G20", "G21", "G22", "G23", "G24", "G25", "G26", "G27", "G28", "G29", "G30", "delta_B1", "delta_B2", "delta_B3", "delta_R", "COD", "TC", "IC", "TOC", "TN", "NH4", "pO2", "pH", "redox_pot" ], "rows": 10, "table": true, "tojson": true }, { "name": "Cell_number_sample", "title": "Dataset with relative measured cell numbers and sample names", "object": "Cell_number_sample", "file": "Cell_number_sample.txt.gz", "class": [ "data.frame" ], "fields": [ "sample", "G1", "G2", "G3", "G4", "G5", "G6", "G7", "G8", "G9", "G10", "G11", "G12", "G13", "G14", "G15", "G16", "G17", "G18", "G19", "G20", "G21", "G22", "G23", "G24", "G25", "G26", "G27", "G28", "G29", "G30" ], "rows": 10, "table": true, "tojson": true }, { "name": "Corr_data_sample", "title": "Dataset with correlation data and sample names", "object": "Corr_data_sample", "file": "Corr_data_sample.txt.gz", "class": [ "data.frame" ], "fields": [ "sample", "G1", "G2", "G3", "G4", "G5", "G6", "G7", "G8", "G9", "G10", "G11", "G12", "G13", "G14", "G15", "G16", "G17", "G18", "G19", "G20", "G21", "G22", "G23", "G24", "G25", "G26", "G27", "G28", "G29", "G30", "delta_B1", "delta_B2", "delta_B3", "delta_R", "COD", "TC", "IC", "TOC", "TN", "NH4", "pO2", "pH", "redox_pot" ], "rows": 10, "table": true, "tojson": true } ], "_help": [ { "page": "flowCyBar-package", "title": "Analyze flow cytometric data", "topics": [ "flowCyBar" ] }, { "page": "Abiotic_data_sample", "title": "Dataset with abiotic data and sample names", "topics": [ "Abiotic_data_sample" ] }, { "page": "Cell_number_sample", "title": "Dataset with relative measured cell numbers and sample names", "topics": [ "Cell_number_sample" ] }, { "page": "Corr_data_sample", "title": "Dataset with correlation data and sample names", "topics": [ "Corr_data_sample" ] }, { "page": "correlation", "title": "Visualize the correlation", "topics": [ "correlation", "correlation,data.frame-method", "correlation,matrix-method" ] }, { "page": "cybar_plot", "title": "Barcode of the normalized cell numbers and boxplot of relative or percental cell numbers", "topics": [ "cybar_plot", "cybar_plot,data.frame,data.frame-method", "cybar_plot,data.frame,matrix-method", "cybar_plot,data.frame,missing-method", "cybar_plot,matrix,data.frame-method", "cybar_plot,matrix,matrix-method", "cybar_plot,matrix,missing-method", "cybar_plot,missing,data.frame-method", "cybar_plot,missing,matrix-method" ] }, { "page": "nmds", "title": "NMDS plot of cell numbers", "topics": [ "nmds", "nmds,data.frame-method", "nmds,matrix-method" ] }, { "page": "normalize", "title": "Normalize cell numbers", "topics": [ "normalize", "normalize,data.frame-method", "normalize,matrix-method" ] } ], "_rundeps": [ "bitops", "caTools", "cluster", "gplots", "gtools", "KernSmooth", "lattice", "MASS", "Matrix", "mgcv", "nlme", "permute", "vegan" ], "_vignettes": [ { "source": "flowCyBar-manual.Rnw", "filename": "flowCyBar-manual.pdf", "title": "Analyze flow cytometric data using gate information", "engine": "utils::Sweave", "headings": [], "created": "2014-03-27 21:47:10", "modified": "2014-12-08 08:01:58", "commits": 2 } ], "_score": 4.146128035678238, "_indexed": true, "_nocasepkg": "flowcybar", "_universes": [ "bioc", "schumanjufz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.49.0", "date": "2026-05-30T08:28:16.000Z", "distro": "noble", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "987cb195a88e13a851550b9f74136ef59f32627b9486abdce42f8737a4ce906e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.6.0", "os": "linux", "version": "1.49.0", "date": "2026-05-30T08:29:16.000Z", "distro": "noble", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "4c0559466bc1591baf6a0268894dfb27b5f309c4e1523d2e3babb03df44214e0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.5.3", "os": "mac", "version": "1.49.0", "date": "2026-05-30T11:55:54.000Z", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "6866069d4ec3467ab49154b4e0cd6934b3fdb75772488c04c8732a5e51234372", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.6.0", "os": "mac", "version": "1.49.0", "date": "2026-05-30T11:56:08.000Z", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "14b45ad47976effa96a6f9554cc142ffe212cf415466c56cc8ef096d83e21036", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.6.0", "os": "wasm", "version": "1.49.0", "date": "2026-05-30T08:27:59.000Z", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "a2bcbc99d274cd3bb150d6e28f1cf8e0a7c7763d764865ca202549ff0cdbc9ea", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.7.0", "os": "win", "version": "1.49.0", "date": "2026-05-30T08:27:04.000Z", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "4b4b92efb7d565c1f88a77445aff694cb8f0c6ea8f5d47f0cb3f8692117facdf", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.5.3", "os": "win", "version": "1.49.0", "date": "2026-05-30T08:27:13.000Z", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "9c561054a1237a522d6a15941071991b6bab7171da99977ed97c1549801a7cfd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" }, { "r": "4.6.0", "os": "win", "version": "1.49.0", "date": "2026-05-30T08:27:05.000Z", "commit": "b73e2d412f2ba69cac5af5d551d902c4ff402982", "fileid": "ebd48d17fb973a4fedbe054af4f62f3ed9f84c9d40632187bae22e3a225e8993", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679139898" } ] }