{
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  "Package": "flowBin",
  "Type": "Package",
  "Title": "Combining multitube flow cytometry data by binning",
  "Version": "1.49.0",
  "Date": "2013-5-11",
  "Author": "Kieran O'Neill",
  "Maintainer": "Kieran O'Neill <koneill@bccrc.ca>",
  "Description": "Software to combine flow cytometry data that has been\nmultiplexed into multiple tubes with common markers between\nthem, by establishing common bins across tubes in terms of the\ncommon markers, then determining expression within each tube\nfor each bin in terms of the tube-specific markers.",
  "License": "Artistic-2.0",
  "LazyLoad": "yes",
  "biocViews": "ImmunoOncology, CellBasedAssays, FlowCytometry",
  "Collate": "'AllClasses.R' 'AllGenerics.R' 'BinnedFlowSample-accessors.R'\n'checkQNorm.R' 'flowBin.R' 'flowFPBin.R'\n'FlowSample-accessors.R' 'getBinExpr.R' 'kMeansBin.R'\n'mapClustersKNN.R' 'quantileNormalise.R' 'removeSparseBins.R'",
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    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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      "title": "Multitube AML sample as example data for flowBin",
      "object": "amlsample",
      "file": "amlsample.rda",
      "class": [
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      "table": false,
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        "amlsample"
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    },
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      "page": "BinnedFlowSample",
      "title": "A 'FlowSample', but with binning information for each tube",
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        "bin.labels,BinnedFlowSample-method",
        "bin.labels<-",
        "bin.labels<-,BinnedFlowSample,list-method",
        "BinnedFlowSample",
        "BinnedFlowSample-class"
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    },
    {
      "page": "checkQNorm",
      "title": "Function to check the quantile normalisation of a FlowSample using flowFP",
      "topics": [
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        "checkQNorm,",
        "checkQNorm,FlowSample,FlowSample-method"
      ]
    },
    {
      "page": "eventsInBins",
      "title": "Count number of events for each tube in each bin",
      "topics": [
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        "eventsInBins,BinnedFlowSample-method"
      ]
    },
    {
      "page": "flowBin",
      "title": "function to run the entire flowBin pipeline",
      "topics": [
        "flowbin-package",
        "flowBin"
      ]
    },
    {
      "page": "flowFPBin",
      "title": "Bin sample using flowFP binning",
      "topics": [
        "flowFPBin",
        "flowFPBin,FlowSample-method"
      ]
    },
    {
      "page": "FlowSample",
      "title": "A class similar to flowSet, but with extra information needed by flowBin",
      "topics": [
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        "bin.pars,FlowSample-method",
        "bin.pars<-",
        "bin.pars<-,FlowSample,vector-method",
        "control.tubes",
        "control.tubes,FlowSample-method",
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        "control.tubes<-,FlowSample,vector-method",
        "FlowSample",
        "FlowSample-class",
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        "measure.pars<-",
        "measure.pars<-,FlowSample,list-method",
        "name",
        "name,FlowSample-method",
        "name<-",
        "name<-,FlowSample,character-method",
        "show,FlowSample-method",
        "tube.set",
        "tube.set,FlowSample-method",
        "tube.set<-",
        "tube.set<-,FlowSample,list-method"
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    },
    {
      "page": "getBinExpr",
      "title": "Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers",
      "topics": [
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        "getBinExpr,BinnedFlowSample-method"
      ]
    },
    {
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      "topics": [
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        "kMeansBin,FlowSample-method"
      ]
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        "mapBinsKNN,FlowSample-method"
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    {
      "page": "quantileNormalise",
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      "topics": [
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        "quantileNormalise,FlowSample-method"
      ]
    },
    {
      "page": "removeSparseBins",
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        "removeSparseBins,BinnedFlowSample-method"
      ]
    },
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      "page": "show-methods",
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        "show,CVResult-method",
        "show-methods"
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