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  "Package": "fishpond",
  "Title": "Fishpond: downstream methods and tools for expression data",
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  "Authors@R": "c(\nperson(\"Anqi\", \"Zhu\", role=c(\"aut\",\"ctb\")),\nperson(\"Michael\", \"Love\", email=\"michaelisaiahlove@gmail.com\", role=c(\"aut\",\"cre\")),\nperson(\"Avi\", \"Srivastava\", role=c(\"aut\",\"ctb\")),\nperson(\"Rob\", \"Patro\", role=c(\"aut\",\"ctb\")),\nperson(\"Joseph\", \"Ibrahim\", role=c(\"aut\",\"ctb\")),\nperson(\"Hirak\", \"Sarkar\", role=\"ctb\"),\nperson(\"Euphy\", \"Wu\", role=\"ctb\"),\nperson(\"Noor\", \"Pratap Singh\", role=\"ctb\"),\nperson(\"Scott\", \"Van Buren\", role=\"ctb\"),\nperson(\"Dongze\", \"He\", role=\"ctb\"),\nperson(\"Steve\", \"Lianoglou\", role=\"ctb\"),\nperson(\"Wes\", \"Wilson\", role=\"ctb\"),\nperson(\"Jeroen\", \"Gilis\", role=\"ctb\")\n)",
  "Maintainer": "Michael Love <michaelisaiahlove@gmail.com>",
  "Description": "Fishpond contains methods for differential transcript and\ngene expression analysis of RNA-seq data using inferential\nreplicates for uncertainty of abundance quantification, as\ngenerated by Gibbs sampling or bootstrap sampling. Also the\npackage contains a number of utilities for working with Salmon\nand Alevin quantification files.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "URL": "https://thelovelab.github.io/fishpond,\nhttps://thelovelab.com/mikelove/fishpond",
  "BugReports": "https://support.bioconductor.org/tag/fishpond",
  "biocViews": "Sequencing, RNASeq, GeneExpression, Transcription,\nNormalization, Regression, MultipleComparison, BatchEffect,\nVisualization, DifferentialExpression, DifferentialSplicing,\nAlternativeSplicing, SingleCell",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:49:37 UTC",
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  "Author": "Anqi Zhu [aut, ctb],\nMichael Love [aut, cre],\nAvi Srivastava [aut, ctb],\nRob Patro [aut, ctb],\nJoseph Ibrahim [aut, ctb],\nHirak Sarkar [ctb],\nEuphy Wu [ctb],\nNoor Pratap Singh [ctb],\nScott Van Buren [ctb],\nDongze He [ctb],\nSteve Lianoglou [ctb],\nWes Wilson [ctb],\nJeroen Gilis [ctb]",
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      "page": "fishpond-package",
      "title": "Fishpond: downstream methods and tools for expression data",
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        "fishpond-package"
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      "page": "addStatsFromCSV",
      "title": "Read statistics and nulls from CSV file",
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      "title": "Construct a sparse matrix of transcript compatibility counts from alevin output",
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      "title": "Compute inferential relative variance (InfRV)",
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    },
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      "title": "Import allelic counts as a SummarizedExperiment",
      "topics": [
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    },
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      "title": "Create isoform proportions from scaled data",
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      "title": "Label rows to keep based on minimal count",
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