{ "_id": "6a0ff155acfb0bcc41c7649d", "Package": "extraChIPs", "Version": "1.17.3", "Title": "Additional functions for working with ChIP-Seq data", "Authors@R": "person(\"Stevie\", \"Pederson\", \nemail = \"stephen.pederson.au@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8197-3303\")\n)", "Description": "This package builds on existing tools and adds some simple\nbut extremely useful capabilities for working wth ChIP-Seq\ndata. The focus is on detecting differential binding\nwindows/regions. One set of functions focusses on\nset-operations retaining mcols for GRanges objects, whilst\nanother group of functions are to aid visualisation of results.\nCoercion to tibble objects is also implemented.", "License": "GPL-3", "Encoding": "UTF-8", "URL": "https://github.com/smped/extraChIPs", "BugReports": "https://github.com/smped/extraChIPs/issues", "biocViews": "ChIPSeq, HiC, Sequencing, Coverage", "BiocType": "Software", "VignetteBuilder": "knitr", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "make libbz2-dev libicu-dev liblzma-dev libxml2-dev\nlibssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-05-21 07:54:55 UTC", "RemoteUrl": "https://github.com/bioc/extraChIPs", "RemoteRef": "HEAD", "RemoteSha": "369c32fb4bddacfb598f80ab81952f174c69be88", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-22 05:46:43 UTC", "User": "root" }, "Author": "Stevie Pederson [aut, cre] (ORCID:\n)", "Maintainer": "Stevie Pederson ", "MD5sum": "aa5f5aad99af38af78c9e0ef201da64a", "_user": "bioc", "_type": "src", "_file": "extraChIPs_1.17.3.tar.gz", "_fileid": "0f2414596204f0c802047fc78e15471245fa4b3a211ce64745fbae9aa55f75fa", "_filesize": 3578417, "_sha256": "0f2414596204f0c802047fc78e15471245fa4b3a211ce64745fbae9aa55f75fa", "_created": "2026-05-22T05:46:43.000Z", "_published": "2026-05-22T06:01:57.103Z", "_jobs": [ { "job": 77323677218, "time": 255, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7153668591" }, { "job": 77323677287, "time": 454, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7153708580" }, { "job": 77323677310, "time": 555, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7153729841" }, { "job": 77323677302, "time": 428, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7153703523" }, { "job": 77323677279, "time": 569, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7153732825" }, { "job": 77323677276, "time": 356, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7153730505" }, { "job": 77323677368, "time": 597, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7153790225" }, { "job": 77323677314, "time": 259, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7153718008" }, { "job": 77323677266, "time": 559, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7153780510" }, { "job": 77323073262, "time": 373, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7153619322" }, { "job": 77323677227, "time": 187, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7153655478" }, { "job": 77323677244, "time": 444, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7153706739" }, { "job": 77323677242, "time": 417, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7153701300" }, { "job": 77323677254, "time": 400, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7153697711" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 9 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/extraChIPs", "_commit": { "id": "369c32fb4bddacfb598f80ab81952f174c69be88", "author": "Stevie Ped ", "committer": "Stevie Ped ", "message": "Fixed tests\n", "time": 1779350095 }, "_maintainer": { "name": "Stevie Pederson", "email": "stephen.pederson.au@gmail.com", "login": "smped", "bluesky": "@smped.bsky.social", "description": "", "uuid": 8252496, "orcid": "0000-0001-8197-3303" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "BiocParallel", "role": "Depends" }, { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "ggplot2", "version": ">= 4.0.0", "role": "Depends" }, { "package": "ggside", "version": ">= 0.4.0", "role": "Depends" }, { "package": "Seqinfo", "role": "Depends" }, { "package": "SummarizedExperiment", "version": ">= 1.39.1", "role": "Depends" }, { "package": "tibble", "role": "Depends" }, { "package": "csaw", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.1.1", "role": "Imports" }, { "package": "edgeR", "version": ">= 4.0", "role": "Imports" }, { "package": "forcats", "role": "Imports" }, { "package": "GenomeInfoDb", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "InteractionSet", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "Rsamtools", "role": "Imports" }, { "package": "rtracklayer", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "tidyselect", "role": "Imports" }, { "package": "vctrs", "role": "Imports" }, { "package": "apeglm", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "SimpleUpset", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "DESeq2", "role": "Suggests" }, { "package": "EnrichedHeatmap", "role": "Suggests" }, { "package": "GenomicAlignments", "role": "Suggests" }, { "package": "GenomicInteractions", "role": "Suggests" }, { "package": "Gviz", "role": "Suggests" }, { "package": "ggforce", "role": "Suggests" }, { "package": "harmonicmeanp", "role": "Suggests" }, { "package": "here", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "limma", "role": "Suggests" }, { "package": "magrittr", "role": "Suggests" }, { "package": "plyranges", "role": "Suggests" }, { "package": "quantro", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tidyverse", "role": "Suggests" }, { "package": "VennDiagram", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-26", "n": 2 }, { "week": "2025-27", "n": 1 }, { "week": "2025-37", "n": 1 }, { "week": "2025-40", "n": 2 }, { "week": "2025-41", "n": 2 }, { "week": "2025-44", "n": 2 }, { "week": "2025-47", "n": 4 }, { "week": "2026-18", "n": 2 }, { "week": "2026-20", "n": 6 }, { "week": "2026-21", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.17.2", "bioc": "3.24" }, { "branch": "release", "version": "1.16.1", "bioc": "3.23" } ], "_topics": [ "chipseq", "hic", "sequencing", "coverage" ], "_stars": 7, "_contributors": [ { "user": "smped", "count": 423, "uuid": 8252496 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 2, "uuid": 2746443 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 402, "source": "https://www.bioconductor.org/packages/stats/bioc/extraChIPs" }, "_devurl": "https://github.com/smped/extrachips", "_searchresults": 36, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/extraChIPs.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/smped/extrachips", "_realowner": "bioc", "_cranurl": false, "_exports": [ "addDiffStatus", "bestOverlap", "centrePeaks", "chopMC", "collapseGenes", "colToRanges", "defineRegions", "defineSeqinfo", "distinctMC", "dualFilter", "fitAssayDiff", "getProfileData", "grlToSE", "importPeaks", "intersectMC", "makeConsensus", "mapByFeature", "mapGrlCols", "mergeByCol", "mergeByHMP", "mergeBySig", "partitionRanges", "plotAssayDensities", "plotAssayHeatmap", "plotAssayPCA", "plotAssayRle", "plotGrlCol", "plotHFGC", "plotOverlaps", "plotPairwise", "plotPie", "plotProfileHeatmap", "plotSplitDonut", "propOverlap", "reduceMC", "setdiffMC", "stitchRanges", "unionMC", "voomWeightsFromCPM" ], "_datasets": [ { "name": "ex_genes", "title": "Datasets for an example region", "object": "ex_genes", "file": "ex_genes.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "ex_hic", "title": "Datasets for an example region", "object": "ex_hic", "file": "ex_hic.rda", "class": [ "GInteractions" ], "fields": [], "table": false, "tojson": false }, { "name": "ex_prom", "title": "Datasets for an example region", "object": "ex_prom", "file": "ex_prom.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "ex_trans", "title": "Datasets for an example region", "object": "ex_trans", "file": "ex_trans.rda", "class": [ "GRanges" ], "fields": [], "table": false, "tojson": false }, { "name": "grch37.cytobands", "title": "Cytogenetic bands", "object": "grch37.cytobands", "file": "grch37.cytobands.rda", "class": [ "data.frame" ], "fields": [ "chrom", "chromStart", "chromEnd", "name", "gieStain" ], "rows": 862, "table": true, "tojson": true }, { "name": "grch38.cytobands", "title": "Cytogenetic bands", "object": "grch38.cytobands", "file": "grch38.cytobands.rda", "class": [ "data.frame" ], "fields": [ "chrom", "chromStart", "chromEnd", "name", "gieStain" ], "rows": 862, "table": true, "tojson": true }, { "name": "peaks", "title": "Datasets for the Fixed-Width Vignette", "object": "peaks", "file": "peaks.rda", "class": [ "CompressedGRangesList" ], "fields": [], "table": false, "tojson": false }, { "name": "se", "title": "Datasets for the Fixed-Width Vignette", "object": "se", "file": "se.rda", "class": [ "RangedSummarizedExperiment" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "addDiffStatus-methods", "title": "Add a status column", "topics": [ "addDiffStatus", "addDiffStatus,data.frame-method", "addDiffStatus,DataFrame-method", "addDiffStatus,GRanges-method", "addDiffStatus,GRangesList-method", "addDiffStatus,SummarizedExperiment-method" ] }, { "page": "as_tibble", "title": "Convert to a tibble", "topics": [ "as_tibble", "as_tibble.DataFrame", "as_tibble.GenomicRanges", "as_tibble.GInteractions", "as_tibble.Seqinfo", "as_tibble.SummarizedExperiment", "as_tibble.TopTags" ] }, { "page": "bestOverlap-methods", "title": "Find the best overlap between GRanges", "topics": [ "bestOverlap", "bestOverlap,GRanges,GRanges-method", "bestOverlap,GRanges,GRangesList-method" ] }, { "page": "centrePeaks-methods", "title": "Re-estimate peak centres from coverage", "topics": [ "centrePeaks", "centrePeaks,GRanges,BamFile-method", "centrePeaks,GRanges,BamFileList-method", "centrePeaks,GRanges,BigWigFile-method", "centrePeaks,GRanges,BigWigFileList-method", "centrePeaks,GRanges,character-method" ] }, { "page": "chopMC", "title": "Keep unique ranges and collapse mcols", "topics": [ "chopMC" ] }, { "page": "collapseGenes", "title": "Collapse a vector of gene names", "topics": [ "collapseGenes" ] }, { "page": "colToRanges-methods", "title": "Coerce a column to a GRanges object", "topics": [ "colToRanges", "colToRanges,data.frame-method", "colToRanges,DataFrame-method", "colToRanges,GRanges-method" ] }, { "page": "cytobands", "title": "Cytogenetic bands", "topics": [ "cytobands", "grch37.cytobands", "grch38.cytobands" ] }, { "page": "defineRegions", "title": "Define Genomic Regions Based on Gene Annotations", "topics": [ "defineRegions" ] }, { "page": "defineSeqinfo", "title": "Use package data to define a Seqinfo object", "topics": [ "defineSeqinfo" ] }, { "page": "distinctMC", "title": "Keep distinct ranges and mcols", "topics": [ "distinctMC" ] }, { "page": "dualFilter", "title": "Apply two filters to sliding windows", "topics": [ "dualFilter" ] }, { "page": "ex_datasets", "title": "Datasets for an example region", "topics": [ "ex_datasets", "ex_genes", "ex_hic", "ex_prom", "ex_trans" ] }, { "page": "fitAssayDiff-methods", "title": "Detect Differential ChIP Signal", "topics": [ "fitAssayDiff", "fitAssayDiff,SummarizedExperiment-method" ] }, { "page": "fixed_width_datasets", "title": "Datasets for the Fixed-Width Vignette", "topics": [ "fixed_width_datasets", "peaks", "se" ] }, { "page": "getProfileData-methods", "title": "Get Profile Data surrounding specified ranges", "topics": [ "getProfileData", "getProfileData,BigWigFile,GenomicRanges-method", "getProfileData,BigWigFileList,GenomicRanges-method", "getProfileData,character,GenomicRanges-method" ] }, { "page": "grlToSE-methods", "title": "Set columns from a GRangesList as Assays in a SummarizedExperiment", "topics": [ "grlToSE", "grlToSE,GRangesList-method" ] }, { "page": "importPeaks", "title": "Import peaks", "topics": [ "importPeaks" ] }, { "page": "makeConsensus", "title": "Make a set of consensus peaks", "topics": [ "makeConsensus" ] }, { "page": "mapByFeature", "title": "Map Genomic Ranges to genes using defined features", "topics": [ "mapByFeature" ] }, { "page": "mapGrlCols", "title": "Collapse a GRangesList adding multiple columns from each element", "topics": [ "mapGrlCols" ] }, { "page": "mergeByCol-methods", "title": "Merge sliding windows using a specified column", "topics": [ "mergeByCol", "mergeByCol,GenomicRanges-method", "mergeByCol,RangedSummarizedExperiment-method" ] }, { "page": "mergeByHMP-methods", "title": "Merge Sliding Windows using the Harmonic Mean P", "topics": [ "mergeByHMP", "mergeByHMP,GenomicRanges-method", "mergeByHMP,RangedSummarizedExperiment-method" ] }, { "page": "mergeBySig-methods", "title": "Merge overlapping ranges based on p-values", "topics": [ "mergeBySig", "mergeBySig,GenomicRanges-method", "mergeBySig,RangedSummarizedExperiment-method" ] }, { "page": "partitionRanges-methods", "title": "Partition a set of Genomic Ranges", "topics": [ "partitionRanges", "partitionRanges,GRanges,GRanges-method" ] }, { "page": "plotAssayDensities-methods", "title": "Plot Densities for any assay within a SummarizedExperiment", "topics": [ "plotAssayDensities", "plotAssayDensities,SummarizedExperiment-method" ] }, { "page": "plotAssayHeatmap-methods", "title": "Draw a heatmap from a single SummarizedExperiment assay", "topics": [ "plotAssayHeatmap", "plotAssayHeatmap,SummarizedExperiment-method" ] }, { "page": "plotAssayPCA-methods", "title": "Plot PCA For any assay within a SummarizedExperiment", "topics": [ "plotAssayPCA", "plotAssayPCA,SummarizedExperiment-method" ] }, { "page": "plotAssayRle-methods", "title": "Plot RLE for a given assay within a SummarizedExperiment", "topics": [ "plotAssayRle", "plotAssayRle,SummarizedExperiment-method" ] }, { "page": "plotGrlCol", "title": "Draw a plot from a GRangesList column", "topics": [ "plotGrlCol" ] }, { "page": "plotHFGC", "title": "Plot a Genomic Region showing HiC, Features, Genes and Coverage", "topics": [ "plotHFGC" ] }, { "page": "plotOverlaps-methods", "title": "Plot Overlaps Between List Elements", "topics": [ "plotOverlaps", "plotOverlaps,GRangesList-method", "plotOverlaps,list-method" ] }, { "page": "plotPairwise", "title": "Plot Pairwise Values from a GRangeList", "topics": [ "plotPairwise" ] }, { "page": "plotPie-methods", "title": "Draw Pie Graphs based on one or more columns", "topics": [ "plotPie", "plotPie,data.frame-method", "plotPie,DataFrame-method", "plotPie,GRanges-method" ] }, { "page": "plotProfileHeatmap-methods", "title": "Draw a coverage Profile Heatmap", "topics": [ "plotProfileHeatmap", "plotProfileHeatmap,GenomicRanges-method", "plotProfileHeatmap,GenomicRangesList-method" ] }, { "page": "plotSplitDonut-methods", "title": "Draw Two-Level Donut Charts", "topics": [ "plotSplitDonut", "plotSplitDonut,data.frame-method", "plotSplitDonut,DataFrame-method", "plotSplitDonut,GRanges-method" ] }, { "page": "propOverlap-methods", "title": "Find the proportions of an overlapping range", "topics": [ "propOverlap", "propOverlap,GRanges,GRanges-method" ] }, { "page": "reduceMC", "title": "Reduce ranges retaining mcols", "topics": [ "reduceMC" ] }, { "page": "setoptsMC-methods", "title": "Perform set operations retaining mcols", "topics": [ "intersectMC", "intersectMC,GRanges,GRanges-method", "setdiffMC", "setdiffMC,GRanges,GRanges-method", "setoptsMC", "unionMC", "unionMC,GRanges,GRanges-method" ] }, { "page": "stitchRanges", "title": "Stitch Ranges within a given distance", "topics": [ "stitchRanges" ] }, { "page": "voomWeightsFromCPM", "title": "Estimate voom precision weights directly From CPM values", "topics": [ "voomWeightsFromCPM" ] } ], "_readme": "https://github.com/bioc/extraChIPs/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bitops", "cigarillo", "cli", "codetools", "cpp11", "crayon", "csaw", "curl", "DelayedArray", "dplyr", "edgeR", "farver", "forcats", "formatR", "futile.logger", "futile.options", "generics", "GenomeInfoDb", "GenomicAlignments", "GenomicRanges", "ggplot2", "ggrepel", "ggside", "glue", "gtable", "httr", "InteractionSet", "IRanges", "isoband", "jsonlite", "labeling", "lambda.r", "lattice", "lifecycle", "limma", "locfit", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "metapod", "mime", "openssl", "patchwork", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "Rcpp", "RCurl", "restfulr", "Rhtslib", "rjson", "rlang", "Rsamtools", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "scales", "Seqinfo", "snow", "SparseArray", "statmod", "stringi", "stringr", "SummarizedExperiment", "sys", "tibble", "tidyr", "tidyselect", "UCSC.utils", "utf8", "vctrs", "viridisLite", "withr", "XML", "XVector", "yaml" ], "_vignettes": [ { "source": "differential_signal_fixed.Rmd", "filename": "differential_signal_fixed.html", "title": "extraChIPs: Differential Signal Using Fixed-Width Windows", "author": "Stevie Pederson", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Setup", "Installation", "Data", "Working With Peaks", "Counting Reads", "Differential Signal Analysis", "Statistical Testing", "Mapping to Genes", "Inspection of Results", "Profile Heatmaps", "Session Info", "References" ], "created": "2023-06-20 17:29:31", "modified": "2025-10-03 13:03:18", "commits": 5 }, { "source": "differential_signal_sliding.Rmd", "filename": "differential_signal_sliding.html", "title": "extraChIPs: Differential Signal Using Sliding Windows", "author": "Stevie Pederson", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Setup", "Installation", "Data", "Differential Signal Analysis", "Sliding Windows", "Filtering of Sliding Windows", "Initial Visualisation", "Statistical Testing", "Merging Windows", "Alternative Normalisation Approaches", "TMM Normalisation", "Mapping of Windows", "Mapping to Genes", "Mapping to Regions", "Visualisation of Results", "Pie Charts", "Split Donut Charts", "Coverage Plots", "Adding Annotations To Coverage", "Displaying Genes and Features", "Session Info", "References" ], "created": "2023-06-20 17:09:18", "modified": "2025-04-02 05:51:13", "commits": 6 }, { "source": "range_based_functions.Rmd", "filename": "range_based_functions.html", "title": "extraChIPs: Range-Based operations", "author": "Stevie Pederson", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Coercion", "Formation of Consensus Peaks", "Simple Operations Retaining mcols()", "Simplifying single GRanges objects", "Set Operations with Two GRanges Objects", "Overlapping proportions", "More Complex Operations", "Range Partitioning", "Stitching Ranges", "Session Info" ], "created": "2022-03-21 11:58:20", "modified": "2025-10-07 13:29:58", "commits": 17 } ], "_score": 6.878521795501206, "_indexed": true, "_nocasepkg": "extrachips", "_universes": [ "bioc", "smped" ], "_previous": "1.17.2", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.17.3", "date": "2026-05-22T05:51:02.000Z", "distro": "noble", "arch": "aarch64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "ae50955f8e8532cbd5312700cc457d7fabc30c9da75c34db5c8ec5ba9fe7a588", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.7.0", "os": "linux", "version": "1.17.3", "date": "2026-05-22T05:51:47.000Z", "distro": "noble", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "8efa8f67fef9bf5dee227fe65f771239fc538a51bb7ef8d39fa1def9dec666cd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.6.0", "os": "linux", "version": "1.17.3", "date": "2026-05-22T05:50:43.000Z", "distro": "noble", "arch": "aarch64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "b37e3e403df69c24ec477fae12d3b9077090a87a616c3ae05ccc90e706aaa7bc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.6.0", "os": "linux", "version": "1.17.3", "date": "2026-05-22T05:51:56.000Z", "distro": "noble", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "15d6f8e5cc726d8badfc25cd91bbfc17e726e862179280f6f016442d985cc3b0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.5.3", "os": "mac", "version": "1.17.3", "date": "2026-05-22T05:52:59.000Z", "arch": "aarch64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "b2d8c57db473512c8bf313feb3fd99f75c173c8507ffde3d61aa6a787803fbf4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.5.3", "os": "mac", "version": "1.17.3", "date": "2026-05-22T05:54:56.000Z", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "e97d8bb2d2779af1eb7cb63d34c279c6f5506d441736bdee81f0bf33eb2544f7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.6.0", "os": "mac", "version": "1.17.3", "date": "2026-05-22T05:52:53.000Z", "arch": "aarch64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "1b3ba9e9cba53cdb056522c59354f88df65141f91fbae272e56caf08b6f9a992", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.6.0", "os": "mac", "version": "1.17.3", "date": "2026-05-22T05:54:47.000Z", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "15f424132358ead79f1f7e71b2c39bfa69fe036127d32b4f45b34896ac1dde16", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.6.0", "os": "wasm", "version": "1.17.3", "date": "2026-05-22T05:50:39.000Z", "arch": "emscripten", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "0ef909e642775eedc211e3aacece00f0d6446b4372b3bd797535e51ac7e56d14", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.7.0", "os": "win", "version": "1.17.3", "date": "2026-05-22T05:49:32.000Z", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "392f54051e3a297211c639bd63b0d6c0de81d915a57b985f3a81cdec0a6ebfae", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.5.3", "os": "win", "version": "1.17.3", "date": "2026-05-22T05:49:31.000Z", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "cd890db871f8262fe33c6f7185f0758ae89c47caff8f4a2c9644edce32686859", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" }, { "r": "4.6.0", "os": "win", "version": "1.17.3", "date": "2026-05-22T05:49:10.000Z", "arch": "x86_64", "commit": "369c32fb4bddacfb598f80ab81952f174c69be88", "fileid": "fdd844b1e54b8b72a76a48ec79eff07c774e8ab1ab199caab401c9865982b985", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26220902318" } ] }