{
  "_id": "6ae763d51e2c7b3a4f530322",
  "Package": "epivizrChart",
  "Title": "R interface to epiviz web components",
  "Version": "1.35.0",
  "Authors@R": "c( person(\"Brian\", \"Gottfried\",\nemail=\"briangottfried@me.com\",\nrole = c(\"aut\")),\nperson(\"Jayaram\", \"Kancherla\",\nemail=\"jayaram.kancherla@gmail.com\",\nrole = c(\"aut\")),\nperson(\"Hector\", \"Corrada Bravo\",\nemail = \"hcorrada@gmail.com\",\nrole = c(\"aut\", \"cre\"))\n)",
  "Description": "This package provides an API for interactive visualization\nof genomic data using epiviz web components. Objects in\nR/BioConductor can be used to generate interactive R\nmarkdown/notebook documents or can be visualized in the R\nStudio's default viewer.",
  "Collate": "'utils.R' 'EpivizChartDataMgr-class.R'\n'EpivizWebComponent-class.R' 'EpivizViewComponent-class.R'\n'EpivizDataSource-class.R' 'EpivizEnvironment-class.R'\n'EpivizChart-class.R' 'EpivizNavigation-class.R'\n'EpivizCharts-classes.R' 'vignette_data.R' 'util-inits.R'\n'generics.R'",
  "VignetteBuilder": "knitr",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "biocViews": "Visualization, GUI",
  "RoxygenNote": "7.1.0",
  "Config/pak/sysreqs": "make libbz2-dev liblzma-dev libpng-dev libxml2-dev\nlibssl-dev xz-utils zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:46:01 UTC",
  "RemoteUrl": "https://github.com/bioc/epivizrChart",
  "RemoteRef": "HEAD",
  "RemoteSha": "28462322442ce7666b207f2b366c1516668e38e6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 13:39:17 UTC",
    "User": "root"
  },
  "Author": "Brian Gottfried [aut],\nJayaram Kancherla [aut],\nHector Corrada Bravo [aut, cre]",
  "Maintainer": "Hector Corrada Bravo <hcorrada@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "epivizrChart_1.35.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/68c89111ad7e1e30ed994298ed3459e61d13a837f730d4fb4f7d384872a56b1b",
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  "_sha256": "68c89111ad7e1e30ed994298ed3459e61d13a837f730d4fb4f7d384872a56b1b",
  "_expires": "2027-02-09T16:07:47.000Z",
  "_created": "2026-11-01T13:39:17.000Z",
  "_published": "2026-11-01T16:07:49.702Z",
  "_upstream": "https://github.com/bioc/epivizrChart",
  "_status": "failure",
  "_maintainer": {
    "name": "Hector Corrada Bravo",
    "email": "hcorrada@gmail.com",
    "login": "hcorrada",
    "description": "",
    "uuid": 2072476
  },
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    "note": 14
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  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41309779833",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
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    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "source": "https://www.bioconductor.org/packages/stats/bioc/epivizrChart"
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/epivizrChart.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
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    "BlocksTrack",
    "epivizChart",
    "epivizEnv",
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    "LinePlot",
    "LineTrack",
    "plot",
    "ScatterPlot",
    "StackedBlocksTrack",
    "StackedLinePlot",
    "StackedLineTrack"
  ],
  "_datasets": [
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      "name": "bcode_eset",
      "title": "Example expression data from the Gene Expression barcode project",
      "object": "bcode_eset",
      "class": [
        "ExpressionSet"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "cgi_gr",
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      "object": "cgi_gr",
      "class": [
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      ],
      "fields": [],
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    },
    {
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      "class": [
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      ],
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      "table": false,
      "tojson": false
    },
    {
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      "object": "tcga_colon_blocks",
      "class": [
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      ],
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      "table": false,
      "tojson": false
    },
    {
      "name": "tcga_colon_curves",
      "title": "Example methylation data (smoothed methylation levels) for epivizr vignette",
      "object": "tcga_colon_curves",
      "class": [
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      ],
      "fields": [],
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      "tojson": false
    },
    {
      "name": "tcga_colon_expression",
      "title": "Example exon-level RNAseq data from TCGA project for epivizr vignette.",
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      ],
      "fields": [],
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      "page": "dot-constructURL",
      "title": "Construct URL for Websocket connection between R and UI",
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      "title": "Initialize Epiviz Chart based on chart type",
      "topics": [
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    },
    {
      "page": "dot-register_all_the_epiviz_things",
      "title": "(taken from epivizr) register epiviz actions",
      "topics": [
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    {
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      "title": "(taken from epivizr) print settings in a readable format",
      "topics": [
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    },
    {
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        "append_region,EpivizEnvironment-method"
      ]
    },
    {
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      "title": "Example expression data from the Gene Expression barcode project",
      "topics": [
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      "title": "Method to add Blocks Track",
      "topics": [
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      ]
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      "topics": [
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      ]
    },
    {
      "page": "chart_default_settings_colors",
      "title": "Get default chart settings and colors",
      "topics": [
        "chart_default_settings_colors"
      ]
    },
    {
      "page": "EpivizBlocksTrack-class",
      "title": "Data container for an Epiviz Blocks Track.",
      "topics": [
        "EpivizBlocksTrack",
        "EpivizBlocksTrack-class"
      ]
    },
    {
      "page": "epivizChart",
      "title": "Initialize an 'EpivizChart' object to visualize in viewer or knit to HTML.",
      "topics": [
        "epivizChart"
      ]
    },
    {
      "page": "EpivizChart-class",
      "title": "Data container for an Epiviz chart component.",
      "topics": [
        "EpivizChart",
        "EpivizChart-class"
      ]
    },
    {
      "page": "EpivizChartDataMgr-class",
      "title": "Class providing data manager for epiviz charts.",
      "topics": [
        "EpivizChartDataMgr",
        "EpivizChartDataMgr-class"
      ]
    },
    {
      "page": "EpivizDataSource-class",
      "title": "Data container for an Epiviz Data Source component.",
      "topics": [
        "EpivizDataSource",
        "EpivizDataSource-class"
      ]
    },
    {
      "page": "epivizEnv",
      "title": "Initialize an 'EpivizEnvironment' object.",
      "topics": [
        "epivizEnv"
      ]
    },
    {
      "page": "EpivizEnvironment-class",
      "title": "Data container for an Epiviz environment component.",
      "topics": [
        "EpivizEnvironment",
        "EpivizEnvironment-class"
      ]
    },
    {
      "page": "EpivizGenesTrack-class",
      "title": "Data container for an Epiviz Genes Track.",
      "topics": [
        "EpivizGenesTrack",
        "EpivizGenesTrack-class"
      ]
    },
    {
      "page": "EpivizHeatmapPlot-class",
      "title": "Data container for an Epiviz Heatmap Plot.",
      "topics": [
        "EpivizHeatmapPlot",
        "EpivizHeatmapPlot-class"
      ]
    },
    {
      "page": "EpivizIGVTrack-class",
      "title": "Data container for an Epiviz Genes Track.",
      "topics": [
        "EpivizIGVTrack",
        "EpivizIGVTrack-class"
      ]
    },
    {
      "page": "EpivizLinePlot-class",
      "title": "Data container for an Epiviz Line Plot.",
      "topics": [
        "EpivizLinePlot",
        "EpivizLinePlot-class"
      ]
    },
    {
      "page": "EpivizLineTrack-class",
      "title": "Data container for an Epiviz Line Track.",
      "topics": [
        "EpivizLineTrack",
        "EpivizLineTrack-class"
      ]
    },
    {
      "page": "epivizNav",
      "title": "Initialize an 'EpivizNavigation' object to visualize in viewer or knit to HTML.",
      "topics": [
        "epivizNav"
      ]
    },
    {
      "page": "EpivizNavigation-class",
      "title": "Data container for an Epiviz navigation component.",
      "topics": [
        "EpivizNavigation",
        "EpivizNavigation-class"
      ]
    },
    {
      "page": "EpivizScatterPlot-class",
      "title": "Data container for an Epiviz Scatter Plot.",
      "topics": [
        "EpivizScatterPlot",
        "EpivizScatterPlot-class"
      ]
    },
    {
      "page": "EpivizStackedBlocksTrack-class",
      "title": "Data container for an Epiviz Blocks Track.",
      "topics": [
        "EpivizStackedBlocksTrack",
        "EpivizStackedBlocksTrack-class"
      ]
    },
    {
      "page": "EpivizStackedLinePlot-class",
      "title": "Data container for an Epiviz Stacked Line Plot.",
      "topics": [
        "EpivizStackedLinePlot",
        "EpivizStackedLinePlot-class"
      ]
    },
    {
      "page": "EpivizStackedLineTrack-class",
      "title": "Data container for an Epiviz Stacked Line Track.",
      "topics": [
        "EpivizStackedLineTrack",
        "EpivizStackedLineTrack-class"
      ]
    },
    {
      "page": "EpivizViewComponent-class",
      "title": "Data container for an Epiviz web component.",
      "topics": [
        "EpivizViewComponent",
        "EpivizViewComponent-class"
      ]
    },
    {
      "page": "EpivizWebComponent-class",
      "title": "Data container for an Epiviz Web component.",
      "topics": [
        "EpivizWebComponent",
        "EpivizWebComponent-class"
      ]
    },
    {
      "page": "get_available_chart_types",
      "title": "Construct URL for Websocket connection between R and UI",
      "topics": [
        "get_available_chart_types"
      ]
    },
    {
      "page": "get_registered_data_types",
      "title": "Construct URL for Websocket connection between R and UI",
      "topics": [
        "get_registered_data_types"
      ]
    },
    {
      "page": "HeatmapPlot-methods",
      "title": "Method to add Heatmap Plot",
      "topics": [
        "HeatmapPlot",
        "HeatmapPlot,EpivizEnvironment-method"
      ]
    },
    {
      "page": "json_parser",
      "title": "JSON parser used by this package",
      "topics": [
        "json_parser"
      ]
    },
    {
      "page": "json_writer",
      "title": "JSON writer used by this package",
      "topics": [
        "json_writer"
      ]
    },
    {
      "page": "LinePlot-methods",
      "title": "Method to add Line Plot",
      "topics": [
        "LinePlot",
        "LinePlot,EpivizEnvironment-method"
      ]
    },
    {
      "page": "LineTrack-methods",
      "title": "Method to add Line Track",
      "topics": [
        "LineTrack",
        "LineTrack,EpivizEnvironment-method"
      ]
    },
    {
      "page": "plot-EpivizEnvironment-ANY-method",
      "title": "Generic methods to plot charts and add navigation regions",
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