{ "_id": "6a1bcfac1d7bb097a0a14093", "Package": "epidecodeR", "Type": "Package", "Title": "epidecodeR: a functional exploration tool for epigenetic and\nepitranscriptomic regulation", "Version": "1.21.0", "Authors@R": "c(person(\"Kandarp\", \"Joshi\", email = \"kandarpbioinfo@gmail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Dan\", \"Ohtan Wang\", email = \"ohtan@riken.jp\",\nrole = \"aut\"))", "BugReports": "https://github.com/kandarpRJ/epidecodeR/issues", "URL": "https://github.com/kandarpRJ/epidecodeR,\nhttps://epidecoder.shinyapps.io/shinyapp", "biocViews": "DifferentialExpression, GeneRegulation, HistoneModification,\nFunctionalPrediction, Transcription, GeneExpression,\nEpitranscriptomics, Epigenetics, FunctionalGenomics,\nSystemsBiology, Transcriptomics, ChipOnChip", "Description": "epidecodeR is a package capable of analysing impact of\ndegree of DNA/RNA epigenetic chemical modifications on\ndysregulation of genes or proteins. This package integrates\nchemical modification data generated from a host of epigenomic\nor epitranscriptomic techniques such as ChIP-seq, ATAC-seq,\nm6A-seq, etc. and dysregulated gene lists in the form of\ndifferential gene expression, ribosome occupancy or\ndifferential protein translation and identify impact of\ndysregulation of genes caused due to varying degrees of\nchemical modifications associated with the genes. epidecodeR\ngenerates cumulative distribution function (CDF) plots showing\nshifts in trend of overall log2FC between genes divided into\ngroups based on the degree of modification associated with the\ngenes. The tool also tests for significance of difference in\nlog2FC between groups of genes.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibxml2-dev libssl-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:55:35 UTC", "RemoteUrl": "https://github.com/bioc/epidecodeR", "RemoteRef": "HEAD", "RemoteSha": "3dff80ab091a521d89a21d2bf05856238e00f2b8", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:34:20 UTC", "User": "root" }, "Author": "Kandarp Joshi [aut, cre],\nDan Ohtan Wang [aut]", "Maintainer": "Kandarp Joshi ", "MD5sum": "c092e697af213fec5711fb777edc8b30", "_user": "bioc", "_type": "src", "_file": "epidecodeR_1.21.0.tar.gz", "_fileid": "de29437779a2ec0fdeb00f20acd0542e5e46d80035dcfe2041c323ff7e6bf8fb", "_filesize": 1993436, "_sha256": "de29437779a2ec0fdeb00f20acd0542e5e46d80035dcfe2041c323ff7e6bf8fb", 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