{
  "_id": "6a497c236d67900babdf7339",
  "Package": "eds",
  "Title": "eds: Low-level reader for Alevin EDS format",
  "Version": "1.15.0",
  "Authors@R": "c(\nperson(\"Avi\", \"Srivastava\", role=c(\"aut\",\"cre\"), email=\"asrivastava@cs.stonybrook.edu\"),\nperson(\"Michael\", \"Love\", role=c(\"aut\",\"ctb\")))",
  "Description": "This packages provides a single function, readEDS. This is\na low-level utility for reading in Alevin EDS format into R.\nThis function is not designed for end-users but instead the\npackage is predominantly for simplifying package dependency\ngraph for other Bioconductor packages.",
  "SystemRequirements": "C++11",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "URL": "https://github.com/mikelove/eds",
  "biocViews": "Sequencing, RNASeq, GeneExpression, SingleCell",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.2",
  "Config/testthat/edition": "3",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:58:43 UTC",
  "RemoteUrl": "https://github.com/bioc/eds",
  "RemoteRef": "HEAD",
  "RemoteSha": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-23 19:23:44 UTC",
    "User": "root"
  },
  "Author": "Avi Srivastava [aut, cre],\nMichael Love [aut, ctb]",
  "Maintainer": "Avi Srivastava <asrivastava@cs.stonybrook.edu>",
  "_user": "bioc",
  "_type": "src",
  "_file": "eds_1.15.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/93e67704013c58167f0bb62d6bbd94df427de724a1cd09bb5a62cd6d5d8e6344",
  "_filesize": 82488,
  "_sha256": "93e67704013c58167f0bb62d6bbd94df427de724a1cd09bb5a62cd6d5d8e6344",
  "_expires": "2026-10-12T21:33:22.000Z",
  "_created": "2026-06-23T19:23:44.000Z",
  "_published": "2026-07-04T21:33:23.903Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 4
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582",
  "_status": "success",
  "_upstream": "https://github.com/bioc/eds",
  "_commit": {
    "id": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381123
  },
  "_maintainer": {
    "name": "Avi Srivastava",
    "email": "asrivastava@cs.stonybrook.edu",
    "login": "k3yavi",
    "twitter": "@k3yavi",
    "description": "Assistant Professor | Computational Biology | Single-Cell Biology | Integrated Systems Immunology | @avisrilab ",
    "uuid": 8772521
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85168746044,
      "time": 149,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7831195583"
    },
    {
      "job": 85168746146,
      "time": 196,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7831213087"
    },
    {
      "job": 85168746152,
      "time": 186,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7831208903"
    },
    {
      "job": 85168746253,
      "time": 181,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7831208030"
    },
    {
      "job": 85168746269,
      "time": 227,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7831223955"
    },
    {
      "job": 85168746276,
      "time": 139,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7831402017"
    },
    {
      "job": 85168746283,
      "time": 524,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7831534512"
    },
    {
      "job": 85168746021,
      "time": 151,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7831401516"
    },
    {
      "job": 85168746205,
      "time": 280,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7831463291"
    },
    {
      "job": 85168745900,
      "time": 193,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7831138610"
    },
    {
      "job": 85168746250,
      "time": 156,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7831198085"
    },
    {
      "job": 85168746215,
      "time": 143,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7831193155"
    },
    {
      "job": 85168746317,
      "time": 156,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7831197416"
    },
    {
      "job": 85168746233,
      "time": 146,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7831194636"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "Matrix",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "tximportData",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.15.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.14.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "sequencing",
    "rnaseq",
    "geneexpression",
    "singlecell",
    "cpp"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mikelove",
      "count": 12,
      "uuid": 69203
    },
    {
      "user": "k3yavi",
      "count": 6,
      "uuid": 8772521
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 441,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/mikelove/eds",
  "_searchresults": 23,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/eds.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/k3yavi/eds",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "readEDS"
  ],
  "_help": [
    {
      "page": "readEDS",
      "title": "A low-level utility function for quickly reading in Alevin EDS format",
      "topics": [
        "readEDS"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/eds/raw/HEAD/README.md",
  "_rundeps": [
    "lattice",
    "Matrix",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "eds.Rmd",
      "filename": "eds.html",
      "title": "eds: Low-level reader function for Alevin EDS format",
      "engine": "knitr::rmarkdown",
      "headings": [
        "eds package for reading in Alevin EDS format",
        "About EDS",
        "Simple example of reading EDS into R:",
        "Session info"
      ],
      "created": "2022-05-25 22:17:22",
      "modified": "2022-05-26 14:35:40",
      "commits": 2
    }
  ],
  "_score": 4.838849090737256,
  "_indexed": true,
  "_nocasepkg": "eds",
  "_universes": [
    "bioc",
    "k3yavi",
    "mikelove"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.15.0",
      "date": "2026-06-23T19:27:01.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/338ce9cfa07549da5f7a83b88d2b019eb6b03e603cd4cba2e0cbe12f375ee53a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.15.0",
      "date": "2026-06-23T19:26:46.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/09a4f7705b229adc03c146a0571eac0e5f94a2cd8f211fa6bcc2b0a1205e6d11",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.15.0",
      "date": "2026-06-23T19:26:47.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/d9e568b9d772164664be827a289dbe4f76fd690b7efbfa12102efab174f16284",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.15.0",
      "date": "2026-06-23T19:27:23.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/f1efd62ccbffc7097037f6b42d4e5d97bcf0cf8866f6272d587df17a529392bd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.15.0",
      "date": "2026-06-23T19:35:07.000Z",
      "arch": "aarch64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/f9fbb27caea7ed20089ad6c942fb79cf817f2081f70e113fd8622cb17409ef7b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.15.0",
      "date": "2026-06-23T19:39:15.000Z",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/3d6d03380ffc73d627326d7e41009642bf6cda000a093e076f1acea56fcdde3c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.15.0",
      "date": "2026-06-23T19:35:08.000Z",
      "arch": "aarch64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/0adc88c7e68c2006a620861b62be4947e5c57e445adb3104762215b3e9fe100a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.15.0",
      "date": "2026-06-23T19:37:12.000Z",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/87c8259f569a5ea435958ab0e3c2759b66268cf33fe2657b87e90ca1e330ad42",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.15.0",
      "date": "2026-06-23T19:26:40.000Z",
      "arch": "emscripten",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/e971de3c2bd44c6b27f94e5f7a693958db4cc60916261af93e2c2d676080d6fd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.15.0",
      "date": "2026-06-23T19:25:35.000Z",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/933b022a8343dc8f3cb245f4c64c2896687d80ad725af05ba4f155c966c5ff33",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.15.0",
      "date": "2026-06-23T19:25:24.000Z",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/a7a1bb07aba0b9355f67688f868ce7880db6e6abcc3970d2f768af228d7ee87f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.15.0",
      "date": "2026-06-23T19:25:46.000Z",
      "arch": "x86_64",
      "commit": "5731621711aaab2db0079c6b8afb57c3b1adf7c0",
      "fileid": "https://r2.ropensci.org/21d6c134ef0aaa0a44946a7067e5926c53cd1f1561aed882f3202f1ae362b3da",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28051001582"
    }
  ]
}